DreEX0079083 @ danRer10
Exon Skipping
Gene
ENSDARG00000042467 | tlk1a
Description
tousled-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-071008-2]
Coordinates
chr9:3577636-3598544:+
Coord C1 exon
chr9:3577636-3577778
Coord A exon
chr9:3597829-3597950
Coord C2 exon
chr9:3598473-3598544
Length
122 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTGTTGTTCCGCAGGTG
3' ss Score
12.91
5' ss Seq
AAAGTTAGT
5' ss Score
4.24
Exon sequences
Seq C1 exon
CATACACGCGTCGTCTTGTGACGTGAAATCACGTTTAAGTTGAAAACTGTCGATTTTGGACGCTGGAGTTGGGGATTTTAGTGAGCAGGAGTGAGACTTGGAGACTGGGTTCATGATGGCAGGGTCGCCGATGGAGCAAATGG
Seq A exon
GTGCTATGGAAGAGCTGCACAGTCTGGACCCTCGACGTCAGGAGCTGCTGGAGGCCAGATTTCTGGGCGGGGTCAGCGGAAACACGGTGGGCAGCACTGGCAGCACTAGCGGCGGAACTAAA
Seq C2 exon
ACCTTGACAAACAACGAATGTTCCAATCACAGCTTTGGAAGTCTGGGCTCCTCCAGTGATAAAGAGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042467-'3-3,'3-2,12-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATACACGCGTCGTCTTGTGA
R:
ACTCTTTATCACTGGAGGAGCCC
Band lengths:
210-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]