MmuEX0047460 @ mm10
Exon Skipping
Gene
ENSMUSG00000041997 | Tlk1
Description
tousled-like kinase 1 [Source:MGI Symbol;Acc:MGI:2441683]
Coordinates
chr2:70757474-70825728:-
Coord C1 exon
chr2:70825193-70825728
Coord A exon
chr2:70786877-70786995
Coord C2 exon
chr2:70757474-70757549
Length
119 bp
Sequences
Splice sites
3' ss Seq
GCTTCTCTCTCTCTTCATAGGTG
3' ss Score
12.76
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TGATGCAGAGGTTACCCCGCCGCCTCAGCCGCCACCCACCGCCCGCCACCGCCCGGGCGACGCCGGGGCCCGACGCACTGCAGAGGTGCCGGCAGGTTCCGCCCGCGGAAGTGGCCTCGGTCGGCGCGGCCCGCGCTCCGCCCGCGCTCCGGCCCCGGCCCCGCGGCCCCGGCCACTCGCCTCCCCTCGGCGCTACCCTCCCCGCCCGCCCTCCGCCCGGCGCGCTCCCTCGGCGGCGCGGCGCTCCCCTCCCAGCCCTCGCGCCCGCGCTCGCCCTCAGCGCGGCCCCCGCCATGACGGAGGCGGGTGCCGGTGCCGCCGCCGTCGCAGGGGGGGAGTCGGGCTCCCAGAAAGTAGCTTGATGAGTGTCCAAAGTAGCAGTGGAAGTTTGGAGGGGCCGCCATCTTGGTCCCGGCTCTCCACGTCTCCAACCCCGGGCTCGGCGGCGGCGGCCAGGTCCCTGCTGAATCACACGCCGCCATCCGGGAGGCCCAGGGAAG
Seq A exon
GTGCAATGGATGAGCTTCACAGTCTGGACCCAAGAAGGCAAGAATTATTGGAAGCAAGATTTACTGGAGTTGCTACTGGGAGTACTGGGAGTACTGGGAGTTGCAGTGTTGGAGCAAAA
Seq C2 exon
ACACCAGAGAAGAAACAATCAGAGTCATCCAGGGGAAGAAAGAGAAAAGCAGAAAGTCAGAATGAAAGTAGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041997_MULTIEX2-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000038584fB4149
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGACGGAGGCGGGTG
R:
TCTTCCCCTGGATGACTCTGA
Band lengths:
248-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types