BtaEX0036527 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006918 | TLK1
Description
tousled-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
Coordinates
chr2:25314420-25408008:+
Coord C1 exon
chr2:25314420-25315060
Coord A exon
chr2:25382840-25382958
Coord C2 exon
chr2:25407937-25408008
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTGGTCTTAATAGGTG
3' ss Score
10.19
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CGCGGAAGTCTTCTCGGCTGGCGCAGCCCGCGCTCCGCCCGCGCTCCGACCCCGGCCCCAGCGGGCGCCCCCTCGACGCCTCCGCCGCGGCGCTCCTTCCCTCCGCCTCTTCCCCGGCGCGCCCGCCGGCTCCCTTACTTCTCCCGCTTTTCCTCCTCCCCGTCCCCTCTCCTCCCCTCACCTCTACCCTCCCCACCTCCCCCCTTCTTGGTTTCCTCCCCCATCCCCTTGACTCTCCCCTCCCTGCCCTCGCTCTCCTGCTCGCCCTCAGCGCGGCCCCCGCCATGACGGAGGCGGGTGCCGGTGCCGTTGCCGCCGCTGCCGTCGCAGGGGGGGAGTCGGGTTCCCAGAAAGTAGCTTGATGAGTGTCCAAAGTAGCAGTGGAAGTTTGGAGGGGCCGCCATCTTGGTCCCAGCTCTCCACGTCTCCAACCCCGGGCTCGGCGGCGGCGGCCAGGTCCCTGCTGAATCACACGCCGCCATCCGGGAGGCCCAGGGAAG
Seq A exon
GTGCAATGGATGAGCTTCATAGTCTGGATCCAAGAAGGCAAGAATTATTGGAAGCTAGATTTACAGGAGTTGCAAGTGGGAGCACGGGGAGCACGGGCAGTTGCAGTGTTGGAGCTAAA
Seq C2 exon
GCCTCAACAAATAATGAAAGCTCTAATCACAGTTTTGGAAGCTTGGGATCTTTGAGTGACAAAGAATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006918_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.975 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGACGGAGGCGGGTG
R:
AGAGCTTTCATTATTTGTTGAGGC
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development