GgaEX7005983 @ galGal4
Exon Skipping
Gene
ENSGALG00000009569 | TLK1
Description
tousled-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
Coordinates
chr7:17598997-17618174:+
Coord C1 exon
chr7:17598997-17599063
Coord A exon
chr7:17614477-17614595
Coord C2 exon
chr7:17618103-17618174
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCATTTGTTTGTTTGTTTAGGAG
3' ss Score
8.58
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
TATCCTTGCAGCATATAACTTAATTTGGAAATGAAGTACTGGAGCTGTGATGGCAAAACAGTTCCCA
Seq A exon
GAGCAATGGATGAACTTCATAGCCTGGACCCAAGAAGACAAGAATTGTTAGAGGCAAGATTCACAGGAGTAGTAAGTGGCAGCACTGGGAGTACTGGAAGTTGCAGCGTTGGAGCTAAA
Seq C2 exon
GCCTCAACAAATAATGAAAGTTCGAACCACAGTTTTGGAAGCTTGGGATCTTTAAGTGATAAAGAATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009569-'4-5,'4-0,10-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=0.975 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGCAGCATATAACTTAATTTGG
R:
TCTTTATCACTTAAAGATCCCAAGCT
Band lengths:
130-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]