DmeEX0009850 @ dm6
Exon Skipping
Gene
FBgn0086899 | tlk
Description
NA
Coordinates
chrX:3720007-3783559:+
Coord C1 exon
chrX:3720007-3720513
Coord A exon
chrX:3721376-3721647
Coord C2 exon
chrX:3781655-3783559
Length
272 bp
Sequences
Splice sites
3' ss Seq
TTATTTATTAATTTTTTCAGATG
3' ss Score
8.73
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
TAGGCCATTTCTGCGTGTGTGCGTTCGTGTGAATATTGTGAATATTTTTTTTACTGTGAAAATAGACAAAAATCGGCTGTGGAAAACCGAAGTAAACACATTTGGGAATCATGGCGATTGGCCCTTAACCTTAACCCTTAAGTGTCGTGCCGACAGTGCCACGCCACAAACCCAAATCCCAAAGAAACAAAAGCGAAAGAAAAAAAAAAAAGAACAACAAAAAGCTATAGTTGCAGCCTCTGAAAGTTTAAGACAATCGCCGATCCGATCGGAAGCGGAAGATATATGCTCGCCACACCAAATGGCATGGTAAACACCTCTCGTTCCTCTAAATGTGATGTCGATGTCGGAAAAGCCGTAGAAATCGTACAATTCCTAAAATCGCAAACTTAACCTCGCAGCGTTGTGTGCAAAAACGGAGAGGGGTGGGGGGGAAACAACGGAAAAAAAAGGCAACGCAAAGCAAAGCAAACGAAAAGCGAAGCGTGTGCGAGCGAGAG
Seq A exon
ATGAATTTGTCACTTTATTATTGCCATGGCTCTGACAAATCTTGTCGCACTCGTTGCCGACATTTGCAATCGATCAATATTAAAATATTGAATAACTAAACCAACCACGAGCTAAAAGAAAAATTTCAGAAAAACTTTTGTATCTGAATCGAAAACAAAAAAAAAAACAAATTCCTATCGGCGCTTATAATCACAAAGTAATGGATCAATTTCAAACTTCACTAAATCCGCGGAAACTCGAGCTTCTGGAGTCTCGAATTACTGGAGTGCGG
Seq C2 exon
ATGTCCCCCGGCGCCCATTTGCAGATGTCCCCGCAGAACACTTCGTCCCTAAGTCAACACCATCCACATCAACAGCAACAGTTACAACCCCCACAGCAGCAACAACAGCATTTCCCTAACCATCACAGCGCCCAGCAACAGTCGCAGCAGCAGCAGCAACAGGAGCAACAGAATCCCCAGCAGCAGGCGCAACAGCAGCAGCAGATACTCCCACATCAACATTTGCAGCACCTGCACAAGCATCCGCATCAGCTGCAACTGCATCAGCAGCAGCAACAACAACTCCACCAGCAACAGCAGCAACACTTCCACCAGCAGTCGCTGCAAGGGCTGCATCAGGGTAGCAGCAATCCGGATTCGAATATGAGCACTGGCTCCTCGCATAGCGAGAAGGATGTCAATGATATGCTGAGTGGCGGTGCAGCAACGCCAGGAGCTGCAGCAGCAGCGATTCAACAGCAACATCCCGCCTTTGCGCCCACACTGGGAATGCAGCAACC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0086899_MULTIEX1-1/4=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.817 C2=0.891
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF096065=Med15=PU(97.0=60.3)
Main Inclusion Isoform:
FBpp0288855
Main Skipping Isoform:
FBpp0288856
Other Inclusion Isoforms:
FBpp0288857, FBpp0290873, FBpp0305894
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTAACCTCGCAGCGTTGT
R:
CTGCTGGGGATTCTGTTGCTC
Band lengths:
297-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)