GgaEX0000356 @ galGal4
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr27:2370812-2374447:+
Coord C1 exon
chr27:2370812-2370907
Coord A exon
chr27:2373631-2373798
Coord C2 exon
chr27:2374352-2374447
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTGACTGTGTTACAGCGG
3' ss Score
8.31
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
TTTGCTGGGGGAAGCGGCCCAGGAACCAGTCCTGGTAGAAGTGTGCCACCAGTTGCCAGATCATCACCGCAGCATTCCTTATCCAACCCCTTACCA
Seq A exon
CGGCGAGTGGAGCAGCCGCTGTATGGGGTAGACGGCAGCACAGCAAAGGAACCACAGGAGGATCACTCTGCTCTGCCAACGCTGATGTCGGTGATGCTGGCGAAACAGCGGCTAGAGAGTGAGCAGCTGGCACAGAGGGGAGGTGGCCTCTGCTTTACTTTTGTCTCG
Seq C2 exon
GCCCAGCAAGGCAGCCCATCTTCTACGGGATCAGGGAACACTGAGCATTCCTGCACTTCCCAAAAACAGATTTCCATCCAGCACAAACAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410_MULTIEX1-7/8=6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.732 C2=0.901
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGGCCCAGGAACCA
R:
GTGACTGTTTGTGCTGGATGGA
Band lengths:
180-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]