GgaEX0000357 @ galGal4
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr27:2373631-2377531:+
Coord C1 exon
chr27:2373631-2373798
Coord A exon
chr27:2374352-2374447
Coord C2 exon
chr27:2377439-2377531
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACCCTGACTTTCTTTTGCAGGCC
3' ss Score
11.99
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
CGGCGAGTGGAGCAGCCGCTGTATGGGGTAGACGGCAGCACAGCAAAGGAACCACAGGAGGATCACTCTGCTCTGCCAACGCTGATGTCGGTGATGCTGGCGAAACAGCGGCTAGAGAGTGAGCAGCTGGCACAGAGGGGAGGTGGCCTCTGCTTTACTTTTGTCTCG
Seq A exon
GCCCAGCAAGGCAGCCCATCTTCTACGGGATCAGGGAACACTGAGCATTCCTGCACTTCCCAAAAACAGATTTCCATCCAGCACAAACAGTCACAG
Seq C2 exon
TCGGACCTCACAATGGAAAAAATATCTGCACTAGAAAACAGTAAGAACTCTGACTTGGAGAAGAAGGAAGGGAGGATAGATGACTTACTAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410_MULTIEX1-8/8=7-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.732 A=0.901 C2=0.677
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCACTCTGCTCTGCCAAC
R:
TCCCTTCCTTCTTCTCCAAGTCA
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]