RnoEX0090879 @ rn6
Exon Skipping
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93451477-93470726:+
Coord C1 exon
chr10:93451477-93451644
Coord A exon
chr10:93464374-93464469
Coord C2 exon
chr10:93470616-93470726
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGATGTACTTTTATTATAGGCT
3' ss Score
6.9
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CGTCGAGTAGAACAGCCTCTCTATGGTTTAGATGGCAGTACTGCAAAGGAGGCCTCAGAAGAGCAGTCTGCCCTGCCAACCCTCATGTCAGTGATGTTAGCAAAACCTCGACTTGACACAGAGCAGTTAGCGCCAAGGGGAGCTGGCCTCTGCTTCACTTTCGTCTCT
Seq A exon
GCTCAACAAAACAGCCCTTCGTCCACGGGGTCTGGCAATACAGAACATTCTTGCAGCTCCCAGAAACAGATCTCCATCCAGCACAGGCAGACCCAG
Seq C2 exon
GCCAACTGTGATTTGAGACGACAGATAGATGAACAGCAAAAGATGCTAGAGAAATACAAGGAACGATTAAATAGATGTGTCACCATGAGCAAGAAGCTCCTTATAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285_MULTIEX2-1/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.726 A=0.885 C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAAACCTCGACTTGACACA
R:
GCTTCTTGCTCATGGTGACAC
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]