DreEX6016094 @ danRer10
Exon Skipping
Gene
ENSDARG00000010779 | tlk2
Description
tousled-like kinase 2 [Source:ZFIN;Acc:ZDB-GENE-060623-36]
Coordinates
chr3:19545740-19548248:+
Coord C1 exon
chr3:19545740-19545838
Coord A exon
chr3:19547960-19548067
Coord C2 exon
chr3:19548156-19548248
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTTTTGGTTTTGATTGACAGGTG
3' ss Score
8.13
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTTGCAGGCGGTAGTGGTACAGGTACCAGTCCAGCTCGTGGCATTCCTCCAGTGGCGCGCTCCTCTCCTCAGCACTCTCTATCTAATCCTCCTGCTGCC
Seq A exon
GTGCAGCAAGGAAGCCCCTCCTCCATCAGTTCAGTAAACACAGACCACTCCCACACCTCCACCTCCCACAAGCCAGCCTCAATACACACTCAGCACCGAGCTTCACAG
Seq C2 exon
TCTGAGCTGACTATGGAGAAATTAGCAGCGCTGGAGAGCAGTAAGAGTTCAGATCTGGAGAAGAAAGAAGGACGTATCGATGACCTGCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010779-'10-12,'10-11,11-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.742
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGGTAGTGGTACAGGTAC
R:
CCTGAGCAGGTCATCGATACG
Band lengths:
187-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]