BtaEX0036544 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015713 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr19:47612416-47625723:+
Coord C1 exon
chr19:47612416-47612583
Coord A exon
chr19:47624194-47624289
Coord C2 exon
chr19:47625631-47625723
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTGGTACACCTTTATTCCAGGCT
3' ss Score
4.8
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CGGCGAGTAGAACAGCCTCTCTATGGTTTAGATGGCAGCGCTACAAAGGAGGTGTCAGAGGAGCAGTCTGCCCTGCCAACGCTTATGTCAGTGATGCTGGCAAAACCTCGGCTCGACACAGAGCAGCTGGCACAGAGGGGAGCTGGCCTCTGCTTCACTTTTGTCTCA
Seq A exon
GCTCAGCAAAACAGTCCCTCATCTACGGGATCTGGCAACACAGAGCATTCCTGCAGCTCCCAAAAACAGATCTCCATCCAGCACAGACAGACCCAG
Seq C2 exon
TCTGACCTCACAATAGAAAAAATATCTGCACTAGAAAACAGTAAGAATTCTGATTTAGAGAAGAAGGAAGGAAGAATAGATGATTTATTAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015713_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.812 C2=0.548
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCAACGCTTATGTCAGT
R:
TCCTTCCTTCTTCTCTAAATCAGAA
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development