GgaEX0000357 @ galGal3
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
NA
Coordinates
chr27:2281334-2285821:+
Coord C1 exon
chr27:2281334-2281501
Coord A exon
chr27:2282055-2282150
Coord C2 exon
chr27:2285729-2285821
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACCCTGACTTTCTTTTGCAGGCC
3' ss Score
11.99
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
CGGCGAGTGGAGCAGCCGCTGTATGGGGTAGACGGCAGCACAGCAAAGGAACCACAGGAGGATCACTCTGCTCTGCCAACGCTGATGTCGGTGATGCTGGCGAAACAGCGGCTAGAGAGTGAGCAGCTGGCACAGAGGGGAGGTGGCCTCTGCTTTACTTTTGTCTCG
Seq A exon
GCCCAGCAAGGCAGCCCATCTTCTACGGGATCAGGGAACACTGAGCATTCCTGCACTTCCCAAAAACAGATTTCCATCCAGCACAAACAGTCACAG
Seq C2 exon
TCGGACCTCACAATGGAAAAAATATCTGCACTAGAAAACAGTAAGAACTCTGACTTGGAGAAGAAGGAAGGGAGGATAGATGACTTACTAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410_MULTIEX2-3/3=2-C2
Average complexity
C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.768 A=1.000 C2=0.785
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCACTCTGCTCTGCCAAC
R:
TCCCTTCCTTCTTCTCCAAGTCA
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]