GgaEX0000356 @ galGal3
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
NA
Coordinates
chr27:2278515-2282150:+
Coord C1 exon
chr27:2278515-2278610
Coord A exon
chr27:2281334-2281501
Coord C2 exon
chr27:2282055-2282150
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTGACTGTGTTACAGCGG
3' ss Score
8.31
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
TTTGCTGGGGGAAGCGGCCCAGGAACCAGTCCTGGTAGAAGTGTGCCACCAGTTGCCAGATCATCACCGCAGCATTCCTTATCCAACCCCTTACCA
Seq A exon
CGGCGAGTGGAGCAGCCGCTGTATGGGGTAGACGGCAGCACAGCAAAGGAACCACAGGAGGATCACTCTGCTCTGCCAACGCTGATGTCGGTGATGCTGGCGAAACAGCGGCTAGAGAGTGAGCAGCTGGCACAGAGGGGAGGTGGCCTCTGCTTTACTTTTGTCTCG
Seq C2 exon
GCCCAGCAAGGCAGCCCATCTTCTACGGGATCAGGGAACACTGAGCATTCCTGCACTTCCCAAAAACAGATTTCCATCCAGCACAAACAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410_MULTIEX2-2/3=1-3
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.768 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCGGCCCAGGAACCA
R:
GTGACTGTTTGTGCTGGATGGA
Band lengths:
180-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]