MmuEX0047464 @ mm10
Exon Skipping
Gene
ENSMUSG00000020694 | Tlk2
Description
tousled-like kinase 2 (Arabidopsis) [Source:MGI Symbol;Acc:MGI:1346023]
Coordinates
chr11:105209794-105240456:+
Coord C1 exon
chr11:105209794-105209837
Coord A exon
chr11:105221186-105221353
Coord C2 exon
chr11:105240361-105240456
Length
168 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTTAATGTTTTCCAGCGT
3' ss Score
8.66
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GGAAAGGCACTCCTAGGGGACATAAAATTAGTGATTACTTTGAG
Seq A exon
CGTCGAGCAGAACAGCCTCTGTATGGTTTAGATGGCAGTGCAGCAAAGGAGGCCTCAGAAGAGCAGTCTGCTCTGCCCACCCTCATGTCAGTGATGTTAGCAAAACCGCGACTTGACACAGAGCAGTTAGCGCCACGGGGAGCTGGCCTCTGCTTCACTTTCGTCTCT
Seq C2 exon
GCTCAACAAAACAGTCCTTCTTCTACGGGTTCTGGCAATACAGAACATTCTTGCAGCTCCCAAAAACAGATCTCCATCCAGCACAGACAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020694-'20-24,'20-21,27-24
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.993 A=0.706 C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGCACTCCTAGGGGACA
R:
CTGGGTCTGTCTGTGCTGGAT
Band lengths:
139-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types