DreEX0079111 @ danRer10
Exon Skipping
Gene
ENSDARG00000010779 | tlk2
Description
tousled-like kinase 2 [Source:ZFIN;Acc:ZDB-GENE-060623-36]
Coordinates
chr3:19536133-19541115:+
Coord C1 exon
chr3:19536133-19536716
Coord A exon
chr3:19537625-19537707
Coord C2 exon
chr3:19541044-19541115
Length
83 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTCCTCTCTTCTCAGCCA
3' ss Score
9.94
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GACATATCAGGGTGGAACGGTATTTAAAGAGCCGATTTATCATTTCAGGACGCGTGATCCAGGTTCGGTGCTGACCCGGAGCAGCGAAGACAAACAAGGGACAAAATATCTCATAGCCTCGCCGCTAACAACTAATTTCAAAGCGAATCGCGTGGTTTTGGGCAGGGATTTATTAAGCGTGGATCTACATAGCGATACCGCATGCTTCACATCTAGTAGAAAATAGATATCGGAAAAAGGCCAGCGGAGAAAGGCGGGTTCGGGATATCAAGGCCTCGGAGGTCCTTCAGTCCTCGGACTACAGTAGGGCGCGGAGCTGGCGTCCCCCAGCGACACAGCAGTCACCAAGCGCTGGCGAGGGTCGGGGATTTGGCTGTGGCCTAGCGCTGAGATGTCTGGCTGAGACGGAAAGGGCGAGACGGGAGACCCGAGGAGGAGAACGGTCGAAGAAAAGACATCCAATAAAACGGAAAGCGGGAGAAAAGACTCCATCAATACAG
Seq A exon
CCATGATGGAGGAATTGCACAGCTTGGATCCTCGAAGGCAAGAGCTGCTGGAGGCCCGTTTCACAGGAGTCGGAGTTGCCAAG
Seq C2 exon
GGATCTGGACACAACGAGTCCTCCAACCAGAGCTTGTGTAGTGTGGGCTCTCTCAGTGACAAAGAATTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010779_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGAGATGTCTGGCTGAGA
R:
TTGTCACTGAGAGAGCCCACA
Band lengths:
178-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]