BtaEX6089450 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015713 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr19:47556655-47598557:+
Coord C1 exon
chr19:47556655-47556795
Coord A exon
chr19:47558619-47558701
Coord C2 exon
chr19:47598486-47598557
Length
83 bp
Sequences
Splice sites
3' ss Seq
TACTTTTTGTTTTTCAGTAGAAA
3' ss Score
5.46
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGGGGGTTGCGGCGCTCAGGAGAGGCCCCGGCTCCGCCCCGGGCCTGCCCAAGGGGAGAGCAGAGCGGTCCGCAGCCGGGTCGGGTCGGGGCCCCTCCCGGGAGGAGCGTGGAGCGGCGGCGGCGGCGACAGCGGCGGCAG
Seq A exon
AAATGATGGAAGAATTGCATAGCCTGGACCCCCGACGGCAGGAATTATTAGAGGCCAGGTTTACTGGAGTTGGTGTTAGTAAG
Seq C2 exon
GGGCCACTCAATAGTGAGTCTTCCAACCAGAGCTTGTGCAGCGTGGGGTCCTTGAGTGATAAAGAAGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015713-'2-2,'2-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCGGCGCTCAGGAGAG
R:
TGCACAAGCTCTGGTTGGAAG
Band lengths:
175-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]