BtaEX6089449 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015713 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr19:47601338-47624289:+
Coord C1 exon
chr19:47601338-47601433
Coord A exon
chr19:47612416-47612583
Coord C2 exon
chr19:47624194-47624289
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCATGTTTTCCAGCGG
3' ss Score
10.57
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
TTTGCTGGGGGAAGCGGGCCAGGAACCAGCCCTGGCAGAAGTGTTCCACCAGTTGCACGATCCTCACCGCAACATTCCTTATCCAATCCCTTACCG
Seq A exon
CGGCGAGTAGAACAGCCTCTCTATGGTTTAGATGGCAGCGCTACAAAGGAGGTGTCAGAGGAGCAGTCTGCCCTGCCAACGCTTATGTCAGTGATGCTGGCAAAACCTCGGCTCGACACAGAGCAGCTGGCACAGAGGGGAGCTGGCCTCTGCTTCACTTTTGTCTCA
Seq C2 exon
GCTCAGCAAAACAGTCCCTCATCTACGGGATCTGGCAACACAGAGCATTCCTGCAGCTCCCAAAAACAGATCTCCATCCAGCACAGACAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015713-'8-9,'8-7,10-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.714 C2=0.812
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000020882fB7116
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTGGGGGAAGCGGG
R:
TCTGTCTGTGCTGGATGGAGA
Band lengths:
187-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]