GgaINT0143519 @ galGal3
Intron Retention
Gene
ENSGALG00000000410 | TLK2
Description
NA
Coordinates
chr27:2278515-2282150:+
Coord C1 exon
chr27:2278515-2278610
Coord A exon
chr27:2278611-2282051
Coord C2 exon
chr27:2282052-2282150
Length
3441 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
AATACCCTGACTTTCTTTTGCAG
3' ss Score
-3.84
Exon sequences
Seq C1 exon
TTTGCTGGGGGAAGCGGCCCAGGAACCAGTCCTGGTAGAAGTGTGCCACCAGTTGCCAGATCATCACCGCAGCATTCCTTATCCAACCCCTTACCA
Seq A exon
GTAAGTGTTCTCCTGGGGATGGTGTGGGTGGTACATGGCTTCTGTTGGTGGCCATGCTTCAGGCAGGTGATAAAATGTTGTGAGCAGGAAGGAAGGGTCTCTTGGTGAGCAGTTTCACTTGGTCTCTAATCACTTCTCTTCCTGGTTTTTTGTTTGTTTTGTATTGTGTTGTTGTGCTTTGTTTTTTTTATATCTGAAACTGGGTTTGGGCAGCAAAGCTGAATGTCTGGGATCCTGCTGCAGTTGTTAGTCCAGTTGTAAATGATGTGACTGCCTGAGCTTAAAGCGTGCAGAATCAGTATTTTTACGTGCTGTGTGGATACAGATGGCTTGCTGTCCTTAATTAAACCAGTTCCTTCTTTTATTGCTGTTACCTTGCACTCTAGTGTGGCTCATGAACTTCTACATGAAGTTGGGAGTATCATGTATGCTTGTATAGCACCAATACAGTGATATTTCTGATCTTGATTTCACCCTTGTCTATTGAAAGATGTGCATACCATTGTGATATTGGAAAATCTTTTCCTTCTGTCTGTGCGTGTGACTTGTGAGGAGCATTAGCAAAAGCTTGCAAAGAGATGTGTATACAAGCACATCTGTTGCTATTTTTTGTTAAATAATTCAATTTTGCTGTCTGAGCATTTCTACACGGTCTGAATATGAAGGAGTAACCAGTATTTTAAGCTGTTTTAGCACAAGCTAAAGAAATTTCTTTCAACTAGCAAAGCAGCATTCAGAGGCCATGGTATTTGATCTCTAGCTTTAAACATTGCCATCGCCCCTCTTTAAGATTTTTCAGTATTTGTTGAGTGTCACAGAAGTACAGAGCACCATGGGAAAGGTTAGTACCCTGAAAACCAAATGCAAAGACTTCACTGATTACATTGTTCTGCAGAGACCTTTGCACAGTTCATGAATGTGTACTGAACCAAATCCCAGCACTGAATTCAATATATGTTACTAGATACTGAAGCTCTGCAGTGCTGCTTTAAGGGAGAGCTTCAGCTGTGCTTTTAGATGTTTTGAATGTCTGTAAGAACAAAATGCATCTATAATTGATCATCCTTGTCCTATTAATTCACTAATACTCCTCCTTAAATAGAAGTTAATGAAAGAAAGAATTTCCCTCTGAAAGCAGGGACAGCTCCTTATTCCAGCAGATGAGATACCCTACAAGTGTTTAGGCTGGGACCACGTGATTCTTCCTTTGCTTTTCCTCTCTGCTTGTCTATATTGAGTAGGTAAAAGTTTAAACAGAGCGTTTCTCATGTGGTGAGAGCTGATGGTACAGTTAGTTTGAGTTAGGTCAGTTTGACTCTCTGCTTGCGCAGATGCTCTTTGTGTTTCTTATCTTCCCTTCTTTACTCTTGCAGCTGAACTTGCAATGTTTGCATATTCATAGCAAATTATTATGTGCATTTGCAAGATCTATCATCTTCTTACAAACTGAATGCCAACGGTTTGAGCTAAGCCCTAAAAATGGGGGGATGAGTGAAAACTGGAGAAGATGGAATATCTTATCCATTGCAGATGTCAGTGTGGTCTAGGAAGAAAGCAGAGTGTTAAAATGTCTTTCACAGGGAGATAAACCTGCTCCAAACCCGTGAGTTAATGTATGCTGTACTGGAAATGCTCTGCAGTGAGGACTTGCAGAGGAATTGTAATGGCATCAGGTTGTTGCTTCTTGTCTTCAAATCTCTTGACTGCTTTAAATTGCCTTGCTTCTCCTTTGATCAGAAGAATGACGTGCAGGTCTTCAGCCTCTTGCAAGGTCGCTCTCATATACAGATGTTCCATTGGGGGAAGAAAACGTACTCTTGATGTTTGTAATGTTAGGCAGAAAACACATTGCAGGTTGCAATTTAGGTTTTAAGAGAAACTGGAGCCTGACCTGACTTCTTACTTTCTCTGTGCTGTATGTCTTGCCTGGAGTTATGGCTTGGAATGACTTAGATGAGTGTTACCCAGGCTGCCAAGTCTCAGTGGTCATAGGCTGGCTTTTGAAGTCTGAGTGCTGTAATCAACATAGCTTGGATAACTCTTGTTCTTGTTGAACCCCATTTGTGGATCACCTTTGGAAAACAAGTCCACTCTATGTGAAGGAAGCTGGCCCTAACAGATGCTCTGCATCTTTGTAAAGATTTTGAGGAATATGTTAGTGTTTTGCTTATCTCTCAGGTGGTTTATCCCTGCCTTCATGACAGAAATGAGGCTACCACCATGTCTGGATCTTGGACATGGTTAGGTTGCTGCATTTGGTGGTTATGACTTAGTTTACTTCACTGGGTTAACCAATTTTTTATGACAACTGACTGTGTTAAAATGGGGCCTTAATAAGCAACGTATCGTAACTTCAAGCAGAGTTACAATGTACTGTGACTTCTGCATCTCTGACATATTTTTACCCACTGGCTCTGAAGTACAGATATTCACAAAGGAAGGGTGTGTGTCAGCTGACAAGGAATTCTGTCCTGTGTGTCCGTTTGTTATTTTGTTAAATTGCTAACTTCATCTCCTTTTTGATGTTTGACATTGGAACAAACACTCTGGGAATCCAGTTGGAACCATGAGATCCTCACCGTGCTGCCTGCCCATTCCTGAGCAGCTGCTTCACTGACAACAGTTTTGGCAGAGTCAGAGAATCAGTTTTTAAAAATTCAATTTAAAAAAAAAAAAAAAAAAAGGAAAAAAAGTTTATTGTCTCTTTTTTGACTGTGTTACAGCGGCGAGTGGAGCAGCCGCTGTATGGGGTAGACGGCAGCACAGCAAAGGAACCACAGGAGGATCACTCTGCTCTGCCAACGCTGATGTCGGTGATGCTGGCGAAACAGCGGCTAGAGAGTGAGCAGCTGGCACAGAGGGGAGGTGGCCTCTGCTTTACTTTTGTCTCGGTGAGCAGCTCTGAAAGGACTTGAATGCCAGGGGATGTTTCTAGTTAAGGGATGGGGCATTTGAAGGAGCTCAAGTGCAGCCTGGTTTATTGATGACCAAGTCTACCATCTTCTGGTAAGTTCTTCCTTGTGAAGAGTTCTAGGTCCCAGGCTTTGCTTGTTAATAAAATGAGTTGAGTTTTAAGTTAACAATTTAAAAATCTTGTGTAGATCGAAACCGTAGTATGACTGCCTGCTTGACTGTGAAAATCAAAAAGAATGGAGTACAGCCTTGCTTTTAGAAGTGTAAATTTTGGGCTAGCTTAATCTCAGCTGACATGAGTTATACTAGGTTTTTTAAAAGCTTTGTCTTTTAGCAGGTTGGGCCACACTTCTTCAGAGCAGCTGATTCTCTTGTGTTAATAAACTAAGTCTCTAGAGCATTCTTAAACCTTAACACAAAAGTATGGTACCCAGGCCAGATTACACCTCCCATGAAAAGATAAGTGTATCTGCATGGGCACCAGCAATCATGTTGAGGAGCATATAACAATACCCTGACTTTCTTTTG
Seq C2 exon
CAGGCCCAGCAAGGCAGCCCATCTTCTACGGGATCAGGGAACACTGAGCATTCCTGCACTTCCCAAAAACAGATTTCCATCCAGCACAAACAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410:ENSGALT00000000559:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]