MmuEX0039196 @ mm9
Exon Skipping
Gene
ENSMUSG00000026970 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]
Coordinates
chr2:60680354-60801249:-
Coord C1 exon
chr2:60800748-60801249
Coord A exon
chr2:60799893-60799957
Coord C2 exon
chr2:60680354-60680529
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTAAACTGCCTTAGGTG
3' ss Score
7.77
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ACCGAGCGCAGCCGCCGCTGCCGCCGTACTTTCCACTTGTATTGATCACTCCTAGCTGGGCTCAGCCTGCTCCCGGAGCGCTGCGCGGCCAGAGCGCCAGCCCTTGGCAGCTCGGGTACAGTCGGGCTCCCAGAGGAAACTCCTTGGGAGCGCCCTGTCCGGGGTGTCCTCTGCGCTCTGCAGTGTCTTTCTGTCTGCCTGGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAAGAGCAGAAGGAGGAGGAGGAGGTGGAGGAGGAGGACGTCGTCTGGTCCCGGTTGGGAGGTGGAGCAGTGGCAGCAGCAGCCGCCGAGGCAGCCGCCGCCGCCGCCTCCGGAAAGGGAGAGGCAGGAGAGATCGGGACTTGGAAAACCCAAAGTGTCGGCGACCCTGCAAGGCAGGCTTCCTTCCAGCTTCATGGGCAAAGTGTGGAAACAACAGATGTACCCTCAGTACGCCACCTATTACTACCCCCAGTATCTGCAAGCCAAG
Seq A exon
GTGTTCCCAATTCTGCTCAAAAGTGGCACAGCCTTGGGTAAGGACCACTGATGACATGTAGGCAG
Seq C2 exon
CAGTCTCTGGTCCCAGCACACCCCATGGCCCCACCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGGATCAGCTGAGCAAGACAAACCTCTACATCCGAGGCCTGCCCCCCAATACCACTGATCAAGACCTGGTGAAGCTCTGCCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026970_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0007617=RRM_1=PU(30.3=33.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCTTCATGGGCAAAGTG
R:
CCCATCCTGAGTTGCTACTGC
Band lengths:
178-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types