MmuEX0039196 @ mm10
Exon Skipping
Gene
ENSMUSG00000026970 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]
Coordinates
chr2:60842297-60963192:-
Coord C1 exon
chr2:60962691-60963192
Coord A exon
chr2:60961836-60961900
Coord C2 exon
chr2:60842297-60842472
Length
65 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTAAACTGCCTTAGGTG
3' ss Score
7.77
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ACCGAGCGCAGCCGCCGCTGCCGCCGTACTTTCCACTTGTATTGATCACTCCTAGCTGGGCTCAGCCTGCTCCCGGAGCGCTGCGCGGCCAGAGCGCCAGCCCTTGGCAGCTCGGGTACAGTCGGGCTCCCAGAGGAAACTCCTTGGGAGCGCCCTGTCCGGGGTGTCCTCTGCGCTCTGCAGTGTCTTTCTGTCTGCCTGGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAAGAGCAGAAGGAGGAGGAGGAGGTGGAGGAGGAGGACGTCGTCTGGTCCCGGTTGGGAGGTGGAGCAGTGGCAGCAGCAGCCGCCGAGGCAGCCGCCGCCGCCGCCTCCGGAAAGGGAGAGGCAGGAGAGATCGGGACTTGGAAAACCCAAAGTGTCGGCGACCCTGCAAGGCAGGCTTCCTTCCAGCTTCATGGGCAAAGTGTGGAAACAACAGATGTACCCTCAGTACGCCACCTATTACTACCCCCAGTATCTGCAAGCCAAG
Seq A exon
GTGTTCCCAATTCTGCTCAAAAGTGGCACAGCCTTGGGTAAGGACCACTGATGACATGTAGGCAG
Seq C2 exon
CAGTCTCTGGTCCCAGCACACCCCATGGCCCCACCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGGATCAGCTGAGCAAGACAAACCTCTACATCCGAGGCCTGCCCCCCAATACCACTGATCAAGACCTGGTGAAGCTCTGCCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026970_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.574
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0007617=RRM_1=PU(30.3=33.9)
Main Inclusion Isoform:
ENSMUST00000028347fB3403
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCTTCATGGGCAAAGTG
R:
CCCATCCTGAGTTGCTACTGC
Band lengths:
178-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types