DreEX0061367 @ danRer10
Exon Skipping
Gene
ENSDARG00000074023 | rbms1a
Description
RNA binding motif, single stranded interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4967]
Coordinates
chr11:10925491-10950838:+
Coord C1 exon
chr11:10925491-10925787
Coord A exon
chr11:10936754-10936935
Coord C2 exon
chr11:10950780-10950838
Length
182 bp
Sequences
Splice sites
3' ss Seq
AATCTTTGTTCCCATGACAGCCT
3' ss Score
5.6
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGCGATTTACCGAAACTGGTCGGACGAGCCAAGGTGGGAATAAACCATCGATCAAGAGCGAGGTTTTCCATTTAGCAGAAATTTATATCTGCTCAGGGACGGATTATCACATCACTCCGAGGCCAACATTACAGTGTGCGATGTGGAAAATTTACAGTTCTCTACTGTAACCTAATAACAACTGATTTTGAGAGTAGATTTTTTAAATTCATCATTGGGTCACAGAACGCAGGGGAATACAGGATGATCTTCGCAAATACGGCTAATCCGCTGAGAACGCCATCATATCGAAAGCAG
Seq A exon
CCTCCTGTTGCTCCGCCCACCCTCCCCATGGCCCCGCCCAGCCCGAGCACCAATAGCAGCACCAACAACAGCAGCAGCAGCAGCAGCACGACCGGCTGGGAGCAGCTCAGCAAAACAAACCTCTACATCCGCGGGTTACCGCCGGGAACCACAGATCACGACCTGGTCAAACTCTGCCAGCC
Seq C2 exon
ATATGGGAAGATCGTGTCCACCAAAGCCATTCTTGACAAGACTACAAACAAATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074023-'1-2,'1-0,7-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.623 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=PU(29.9=32.8)
C2:
PF0007617=RRM_1=FE(29.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCTCAGGGACGGATTATCA
R:
GAATGGCTTTGGTGGACACGA
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]