RnoEX0074749 @ rn6
Exon Skipping
Gene
ENSRNOG00000003076 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:RGD Symbol;Acc:1304813]
Coordinates
chr7:2567032-2588843:-
Coord C1 exon
chr7:2588610-2588843
Coord A exon
chr7:2571283-2571443
Coord C2 exon
chr7:2567032-2567090
Length
161 bp
Sequences
Splice sites
3' ss Seq
ACCTTCATGTCTCCTTGCAGCTG
3' ss Score
12.28
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
TGCTCCTTTTCTCCTCTTTCTCCTCCCCCTCCCTTCTCCCTTCCCTCCCTTTTTCCCTCCCTTCCTCTCTCCCTCTCCTTTCCCCCTCCCCTCCTCCCTCCCTTTTTCTCCCTCCCTTTCCTTCACTCTCTTCTTTCTCTCTCTCAGCTCCGTAACAGTAAAGAAAAAATGCTGCTATCAGTGACTTCCAGGCCTGGGATTTCGACTTTTGGCTATAACAAGAACAACAAGAAG
Seq A exon
CTGTATGTGGCTCAGCAAATGGCACCTCCGAGTCCAAGGAACGGCACCCCTAACAGCAGCAGCGGGAGCGGTGGGAACGACCAGCTGAGCAAAACCAACCTGTATATCCGAGGACTGCAGCCAAGCACTACTGACCAGGACCTGGTCAAGCTCTGTCAGCC
Seq C2 exon
GTATGGCAAGATTGTCTCCACCAAGGCCATCCTGGACAAGACCACAAACAAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003076-'1-9,'1-6,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.648 C2=0.036
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=PU(29.9=37.0)
C2:
PF0007617=RRM_1=FE(29.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCTCCCTTCCCTCCCTTT
R:
GTCTTGTCCAGGATGGCCTTG
Band lengths:
245-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]