MmuEX6052101 @ mm10
Exon Skipping
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:128146602-128179845:-
Coord C1 exon
chr10:128179793-128179845
Coord A exon
chr10:128151183-128151355
Coord C2 exon
chr10:128146602-128146660
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATCTTCGTGTCTCCCTGCAGCTA
3' ss Score
11.97
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTCAGAGAGGACTCTGTGAACGTCATTTGGCTTGGCCATAAATTCCACACCTG
Seq A exon
CTATATGTGGCTCAGCAAATGGCACCTCCAAGTCCAAGGAATAGCACCCCCAACAGCAGCGGCGGAGGCGGCGGCGGGAGTGGTGGGAACGACCAGCTGAGCAAAACCAACCTGTATATCCGAGGACTGCAGCCAGGCACCACTGACCAGGACCTTGTCAAGCTCTGTCAGCC
Seq C2 exon
GTATGGCAAGATTGTCTCCACTAAGGCCATCCTGGACAAGACCACAAACAAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043-'3-12,'3-11,9-12=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.715 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0007617=RRM_1=PU(29.9=34.5)
C2:
PF0007617=RRM_1=FE(29.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGGACTCTGTGAACGTCA
R:
TTGCACTTGTTTGTGGTCTTGT
Band lengths:
106-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types