MmuEX6052101 @ mm9
Exon Skipping
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:127583658-127613624:-
Coord C1 exon
chr10:127613406-127613624
Coord A exon
chr10:127588239-127588411
Coord C2 exon
chr10:127583658-127583716
Length
173 bp
Sequences
Splice sites
3' ss Seq
ATCTTCGTGTCTCCCTGCAGCTA
3' ss Score
11.97
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CTTTCTCCTCCCCCTCCCTTCTCCCTTCCCTCCCTCTTTCCCTCCCTTCCTCTCTCCCTCTCCTTTCCCCCTCCCCTCCTCCCTCCCTCTTTCTCCCTCCCTTTCCTTCACTCTCTTCTTTCTCTCTCTCAGCTCCGTAACAGTAAAGAAAAAATGCTGCTATCAGTGACTTCCAGGCCTGGGATTTCGACTTTTGGCTATAACAAGAACAACAAGAAG
Seq A exon
CTATATGTGGCTCAGCAAATGGCACCTCCAAGTCCAAGGAATAGCACCCCCAACAGCAGCGGCGGAGGCGGCGGCGGGAGTGGTGGGAACGACCAGCTGAGCAAAACCAACCTGTATATCCGAGGACTGCAGCCAGGCACCACTGACCAGGACCTTGTCAAGCTCTGTCAGCC
Seq C2 exon
GTATGGCAAGATTGTCTCCACTAAGGCCATCCTGGACAAGACCACAAACAAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043-'2-8,'2-7,4-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.706 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=PU(29.9=34.5)
C2:
PF0007617=RRM_1=FE(29.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCTCCTCCCCCTCCCTTC
R:
CCAGGATGGCCTTAGTGGAGA
Band lengths:
254-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: