HsaEX0052781 @ hg19
Exon Skipping
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif, single stranded interacting protein 2 [Source:HGNC Symbol;Acc:9909]
Coordinates
chr12:56949023-56961970:+
Coord C1 exon
chr12:56949023-56949262
Coord A exon
chr12:56956201-56956367
Coord C2 exon
chr12:56961850-56961970
Length
167 bp
Sequences
Splice sites
3' ss Seq
TTCCTCATGTCTCCCTGCAGCCA
3' ss Score
10.6
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
GACTGAGACTGAGATCTTTCAGACATAATATTAAGAAGACCTTGGTACAAAATTAGCCAGGCATGGTGGCACATGCCTGTAATCCCATCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCGGTGATACAAGATCGCGCCATTGTACTCCAGCCTGGGCAACAAGAGCAAAACTTGGTCTCAAAAAAAAAAAAAAAAGGAAGAAGAAGACCTTGGCCAG
Seq A exon
CCATATGTGTCATTGGCTCAGCAGATGGCACCACCTAGCCCAAGCAACAGTACACCTAACAGCAGTAGTGGAAGCAATGGAAATGACCAGCTGAGCAAAACCAACCTATACATCCGAGGATTGCAACCAGGCACTACTGACCAAGATCTTGTCAAGCTGTGTCAGCC
Seq C2 exon
ATGATGAGGCTGAGACACCAAAAGGTTCAATGACTTGTTCAAGATCACGCATAGCTAAAAAGTGGCAGAACCAGGATTTGAACCAAAGCAATTTGGCTCAGGTTGACCTTCAATTAAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067-'3-5,'3-4,5-5
Average complexity
C3
Mappability confidence:
100%=80=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.742 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
PF0007617=RRM_1=PU(29.9=35.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCCCATCTACTCGGGAGGC
R:
GGTTCAAATCCTGGTTCTGCCA
Band lengths:
244-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)