HsaEX0052780 @ hg19
Exon Skipping
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif, single stranded interacting protein 2 [Source:HGNC Symbol;Acc:9909]
Coordinates
chr12:56949023-56956367:+
Coord C1 exon
chr12:56949023-56949262
Coord A exon
chr12:56955779-56955919
Coord C2 exon
chr12:56956201-56956367
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTATTTTTAATAGAGA
3' ss Score
7.02
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GACTGAGACTGAGATCTTTCAGACATAATATTAAGAAGACCTTGGTACAAAATTAGCCAGGCATGGTGGCACATGCCTGTAATCCCATCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCGGTGATACAAGATCGCGCCATTGTACTCCAGCCTGGGCAACAAGAGCAAAACTTGGTCTCAAAAAAAAAAAAAAAAGGAAGAAGAAGACCTTGGCCAG
Seq A exon
AGACAGGGTTTCACCATGTTAGCCACAATGGTCTCGATCTCCTGACCTCATGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCACGCCCAGCCTACAGACTGTTATCTGGGAAATCCTAAT
Seq C2 exon
CCATATGTGTCATTGGCTCAGCAGATGGCACCACCTAGCCCAAGCAACAGTACACCTAACAGCAGTAGTGGAAGCAATGGAAATGACCAGCTGAGCAAAACCAACCTATACATCCGAGGATTGCAACCAGGCACTACTGACCAAGATCTTGTCAAGCTGTGTCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067-'3-4,'3-3,4-4
Average complexity
C2
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.742
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007617=RRM_1=PU(29.9=35.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATACAAGATCGCGCCAT
R:
TCTTGGTCAGTAGTGCCTGGT
Band lengths:
244-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)