GgaEX1048657 @ galGal4
Exon Skipping
Gene
ENSGALG00000011132 | RBMS1
Description
RNA-binding motif, single-stranded-interacting protein 1 [Source:RefSeq peptide;Acc:NP_990355]
Coordinates
chr7:21176600-21228367:+
Coord C1 exon
chr7:21176600-21176765
Coord A exon
chr7:21202457-21202632
Coord C2 exon
chr7:21228309-21228367
Length
176 bp
Sequences
Splice sites
3' ss Seq
ACGCCCTTTTTCCTTTGCAGCAG
3' ss Score
10.68
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
AGGCACGGAGGCGCGGAGCGCCCTGCAGCCCCGCCGCGCCGCAACCCGGCGGCCGCCAAAGTTGCTCCCCATCCCGAGGGGCGGCCGGGGATCAGGCGAGGCGATGATCTTCCCCAGCAGCAACAGCAGCGCGGCGGGCGGCAGCCGGACGCCCTATAGGAAGCAG
Seq A exon
CAGTCCATTGTACCAGCCCACCCAATGGCTCCTCCTAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGTAGCAGCAGCAACTCAGGATGGGATCAATTAAGTAAAACAAACCTTTACATCAGAGCACTGCCTCCAAACACCACTGATCAGGACCTGGTAAAATTATGCCAACC
Seq C2 exon
GTATGGGAAAATTGTATCCACAAAGGCTATTTTGGATAAGACAACAAACAAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132_MULTIEX1-1/5=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.613 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0007617=RRM_1=PU(29.9=39.2)
C2:
PF0007617=RRM_1=FE(29.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAAAGTTGCTCCCCATC
R:
TTGCACTTGTTTGTTGTCTTATCCA
Band lengths:
170-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]