HsaEX7001502 @ hg38
Exon Skipping
Gene
ENSG00000153250 | RBMS1
Description
RNA binding motif single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]
Coordinates
chr2:160318169-160402102:-
Coord C1 exon
chr2:160401968-160402102
Coord A exon
chr2:160367216-160367391
Coord C2 exon
chr2:160318169-160318227
Length
176 bp
Sequences
Splice sites
3' ss Seq
TCCTGATCTTTGTTTTCCAGCAG
3' ss Score
7.69
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
AGCAAGCAACAGCGGGTGGTCCTAGGAGACTTCTGTGTGGTCTAGGGAGACCTTGACACAGTCGCCTAAGAATGGACCGTGTTTACAGCCTCTAAGAATGGACTGTGTTTAGAATGAGGGGCAGCCTGAAAAAGG
Seq A exon
CAGTCTCTGGTCCCAGCCCACCCCATGGCCCCTCCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGGATCAGCTCAGCAAAACGAACCTCTATATCCGAGGACTGCCTCCCCACACCACCGACCAGGACCTGGTGAAGCTCTGTCAACC
Seq C2 exon
ATATGGGAAAATAGTCTCCACAAAGGCAATTTTGGATAAGACAACGAACAAATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153250-'8-29,'8-17,20-29=AN
Average complexity
A_C3
Mappability confidence:
100%=93=93%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.532 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0007617=RRM_1=PU(29.9=33.9)
C2:
PF0007617=RRM_1=FE(29.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGCAACAGCGGGTG
R:
CTTTGCATTTGTTCGTTGTCTTATCC
Band lengths:
194-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains