BtaEX6009556 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005180 | RBMS1
Description
Bos taurus RNA binding motif, single stranded interacting protein 1 (RBMS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035361]
Coordinates
chr2:35960130-36137173:+
Coord C1 exon
chr2:35960130-35960483
Coord A exon
chr2:36083386-36083561
Coord C2 exon
chr2:36137115-36137173
Length
176 bp
Sequences
Splice sites
3' ss Seq
CTGTGGTCTTTGTTTTCCAGCAG
3' ss Score
8.7
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
AGCCCTTGGCAGCCCCGGAGCAGTCGGGCTCCGGGAGGCAACTCCTTGGGAGCGCCCTGTCCGGGGTGCCCTCTGCGCTCTGCAGTCTCTTTCTCTGTGTCTGGGAGGAGAAGAAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGACGTCTGGTCCGGGCTGGGAGGTGGAGCAGCGGCAGCCGCCGCCGCCGCCGCCGGAAAGGGAGAGGCAGGAGAGATCGAGACTTGGAAACCCCAAAGTGCCCGCGACCCTGCACGGCAGGCTCCCTTCCAGCTTCATGGGCAAAGTGTGGAAACAGCAGATGTACCCTCAGTACGCCACCTACTACTACCCCCAGTATCTTCAAGCGAAG
Seq A exon
CAGTCTCTGGTCCCAGCCCATCCTATGGCCCCTCCCAGCCCCAGCACCACCAGCAGTAATAACAACAGCAGTAGCAGTAGCAACTCAGGATGGGATCAGCTGAGCAAAACGAACCTCTATATCCGGGGACTGCCTCCCAACACCACAGACCAGGACCTGGTGAAGCTGTGTCAGCC
Seq C2 exon
ATATGGGAAGATTGTTTCCACAAAGGCAATTTTGGATAAGACAACAAACAAATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005180-'0-5,'0-1,6-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.525 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=PU(29.9=33.9)
C2:
PF0007617=RRM_1=FE(29.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGGAGGAGGAGGACGTC
R:
GCCTTTGTGGAAACAATCTTCCC
Band lengths:
253-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]