MmuEX6101552 @ mm9
Exon Skipping
Gene
ENSMUSG00000026970 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]
Coordinates
chr2:60635741-60727087:-
Coord C1 exon
chr2:60727047-60727087
Coord A exon
chr2:60680354-60680529
Coord C2 exon
chr2:60635741-60635799
Length
176 bp
Sequences
Splice sites
3' ss Seq
CCCTGGTTTTTGTTTTGCAGCAG
3' ss Score
9.33
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
ATTTGCCTTCTCTTCGCCTTGGGAGTATCAATTTGCCAGAG
Seq A exon
CAGTCTCTGGTCCCAGCACACCCCATGGCCCCACCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGGATCAGCTGAGCAAGACAAACCTCTACATCCGAGGCCTGCCCCCCAATACCACTGATCAAGACCTGGTGAAGCTCTGCCAACC
Seq C2 exon
ATATGGGAAGATCGTGTCCACAAAGGCGATTTTGGATAAGGCCACCAACAAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026970-'4-15,'4-13,13-15=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.562 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0007617=RRM_1=PU(30.3=33.9)
C2:
PF0007617=RRM_1=FE(30.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCTTCTCTTCGCCTTGG
R:
TTTGCACTTGTTGGTGGCCTT
Band lengths:
98-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: