GgaEX1048657 @ galGal3
Exon Skipping
Gene
ENSGALG00000011132 | O73664_CHICK
Description
NA
Coordinates
chr7:23214240-23316941:+
Coord C1 exon
chr7:23214240-23214350
Coord A exon
chr7:23291031-23291206
Coord C2 exon
chr7:23316883-23316941
Length
176 bp
Sequences
Splice sites
3' ss Seq
ACGCCCTTTTTCCTTTGCAGCAG
3' ss Score
10.68
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
CCCCAACCCTGCACTGCAGGCTACATTTCCAGCTTCNTGGGCATAGTGTGGAAACAGCAGATGTACCCCCAGTACACCACCTACTACTACCCCCAGTATCTGCTGGCGAAG
Seq A exon
CAGTCCATTGTACCAGCCCACCCAATGGCTCCTCCTAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGTAGCAGCAGCAACTCAGGATGGGATCAATTAAGTAAAACAAACCTTTACATCAGAGCACTGCCTCCAAACACCACTGATCAGGACCTGGTAAAATTATGCCAACC
Seq C2 exon
GTATGGGAAAATTGTATCCACAAAGGCTATTTTGGATAAGACAACAAACAAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132-'0-5,'0-1,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.464 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=PU(29.9=39.2)
C2:
PF0007617=RRM_1=FE(29.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAACCCTGCACTGCA
R:
CTTTGCACTTGTTTGTTGTCTTATCC
Band lengths:
170-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]