RnoEX0074738 @ rn6
Exon Skipping
Gene
ENSRNOG00000008482 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:RGD Symbol;Acc:1307777]
Coordinates
chr3:46847368-47025128:-
Coord C1 exon
chr3:47024615-47025128
Coord A exon
chr3:46894939-46895114
Coord C2 exon
chr3:46847368-46847426
Length
176 bp
Sequences
Splice sites
3' ss Seq
CCCTGGGTTTTGTTTTGCAGCAG
3' ss Score
9.04
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
CCAAGCGCAGCCGCCGCCGCCGCCGTACTTTCCACTTGTATTGATCACTCGTAGCTGGGCTCAGCCTGCTCCCGGAGCGCAGCGCGGCCAGAGCGCCAGCCCTTGGCAGCTCGGGCACAGTCGGGCTCCCAGAGGAAACTCCTTGGGAGCGCCCTGTCCGGGGTGTCCTCTGCGCTCTGCAGTGTCTTTCTGTCTGCCTGGAAGGAGGAGGAGGAGAAGGAGGAGGAGGAAGAGCAGAAGGAGGAGGAGGAGGTGGAGGAGGAGGACGTCGTCTGGTCCCGGTTGGGAGGTGGAGCAGTGGCAGCAGCAGCCGCCGAGGCAGCCGCCGCCGCCGCCTCCGGAAAGGGAGAGGCAGGAGAAAGAGATCGGGACTTGGAAAACCTAAAGTGTCTTCGACCCTGCACGGCAGGCTTCCTTCCAGCTTCATGGGCAAAGTGTGGAAACAACAGATGTACCCTCAGTACGCCACCTATTACTACCCCCAGTATCTGCAAGCCAAG
Seq A exon
CAGTCTCTGGTCCCAGCGCACCCCATGGCCCCTCCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGGATCAGCTGAGTAAGACGAACCTCTACATCCGAGGCCTGCCCCCCAACACCACTGATCAAGACCTGGTGAAGCTCTGTCAACC
Seq C2 exon
ATACGGGAAGATTGTCTCCACGAAGGCGATTTTGGATAAGGCAACCAACAAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008482-'0-7,'0-5,9-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.525 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=PU(29.9=33.9)
C2:
PF0007617=RRM_1=FE(29.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGAGGTGGAGCAGTGG
R:
TCCAAAATCGCCTTCGTGGAG
Band lengths:
254-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]