MmuEX6101552 @ mm10
Exon Skipping
Gene
ENSMUSG00000026970 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]
Coordinates
chr2:60797684-60881438:-
Coord C1 exon
chr2:60881118-60881438
Coord A exon
chr2:60842297-60842472
Coord C2 exon
chr2:60797684-60797742
Length
176 bp
Sequences
Splice sites
3' ss Seq
CCCTGGTTTTTGTTTTGCAGCAG
3' ss Score
9.33
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GGGAGGTGGGGACGCGGCGGCGCTGCTCGTCCGCTGCCGCCGGCACCGCGCGCGAACTCCGGTCCATGGCACGCAGGGCGGCGGCCCCCGGAGCTGCTCGAGAGTCGCCGGCCGCGCGCGTCGCGCCGCACTTTTAGGGCGGGAGCCGCGAGCCAGTCCCCGGCCGCATCCTCCCTCCGCCTGCCCGGACAGGCGAGAGAGGGAGTTCCCGGAGCGCCGCGGCCCCGGTTGCCTCAGCTCCCCGCGCCCGAGATGATCTTCCCCAGCGGCAGCGGCCACCCCGGCGCTGCCGGCGGCTGCAGGACGCCCTACCGCAAGCAG
Seq A exon
CAGTCTCTGGTCCCAGCACACCCCATGGCCCCACCCAGTCCCAGCACCACCAGCAGTAATAACAACAGTAGCAGCAGTAGCAACTCAGGATGGGATCAGCTGAGCAAGACAAACCTCTACATCCGAGGCCTGCCCCCCAATACCACTGATCAAGACCTGGTGAAGCTCTGCCAACC
Seq C2 exon
ATATGGGAAGATCGTGTCCACAAAGGCGATTTTGGATAAGGCCACCAACAAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026970-'9-15,'9-13,22-15
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.870 A=0.574 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=PU(30.3=33.9)
C2:
PF0007617=RRM_1=FE(30.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCGCCGCACTTTTAGG
R:
TTGCACTTGTTGGTGGCCTTA
Band lengths:
258-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types