DreEX6090204 @ danRer10
Exon Skipping
Gene
ENSDARG00000044179 | rbms2a
Description
RNA binding motif, single stranded interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-030912-2]
Coordinates
chr11:1874658-1900600:+
Coord C1 exon
chr11:1874658-1874776
Coord A exon
chr11:1890433-1890590
Coord C2 exon
chr11:1900542-1900600
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCCTTGTTTTCCCTCTTCAGCAG
3' ss Score
9.4
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
Exon sequences
Seq C1 exon
TCCTCTCACTGACGTCAGCGGCCGCTCCGGACACCGCGCCGAGGAAAATGCTGCTCTCCGTACCGCCGCGCACGGGATTCAACCCCTACAGCGGATACAACAGCAGAAACGGCAAAAAG
Seq A exon
CAGCAAGCCTATGTGTCCTCCAGCCAGCAGATGGCGCTGTCCAGTCCCAACAGTAGCAGCAGCAGTATTGCAGGAGAACAGCTCAGCAAAACCAACCTGTACATCCGCGGCCTTCATCCTGGCACCACTGACCAGGACTTGGTGAAGCTCTGCCAGCC
Seq C2 exon
GTATGGAAAGATCGTGTCCACCAAGGCCATTCTGGATAAAACTACCAACAAATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044179-'0-2,'0-0,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.453 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=PU(29.4=37.7)
C2:
PF0007617=RRM_1=FE(29.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGCGCCGAGGAAAAT
R:
TTTGCATTTGTTGGTAGTTTTATCCA
Band lengths:
146-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]