DreEX0061381 @ danRer10
Exon Skipping
Gene
ENSDARG00000056150 | rbms2b
Description
RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51]
Coordinates
chr23:25782246-25816126:+
Coord C1 exon
chr23:25782246-25782366
Coord A exon
chr23:25808322-25808488
Coord C2 exon
chr23:25816068-25816126
Length
167 bp
Sequences
Splice sites
3' ss Seq
TCTTATCTCCGTTTTTACAGCAG
3' ss Score
8.72
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
ACGAGGCGCTCCGGACACACAGCGCGCTGCTGCTGCTGCTGCTGTAAAAATGCTGCTCTCGGTGCCGCCAAGGACAGGAATCAACCCGTATAACGGCTACACCAGCAGAACCGGTAAAAAG
Seq A exon
CAGGCGTATGCATCCTCCACCCAGCAGATGGCGCCGCCCAGTCCCAACACCACCAGCAGTAGTAATGGAAGCAGCAGCGGTGGAGACCAGCTGAGCAAAACCAACCTGTACATCCGTGGACTCCATCCAGGAACCACAGACCAGGATCTGGTCAAACTCTGTCAACC
Seq C2 exon
CTATGGAAAAATAGTGTCAACTAAGGCCATACTTGACAAGACCACCAACAAGTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056150-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.792 A=0.750 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=PU(29.9=35.7)
C2:
PF0007617=RRM_1=FE(29.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGCTGCTGTAAAAA
R:
ACACTTGTTGGTGGTCTTGTCA
Band lengths:
147-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]