DreEX6042218 @ danRer10
Exon Skipping
Gene
ENSDARG00000044574 | rbms3
Description
RNA binding motif, single stranded interacting protein [Source:ZFIN;Acc:ZDB-GENE-060929-244]
Coordinates
chr16:39887238-39909087:-
Coord C1 exon
chr16:39908831-39909087
Coord A exon
chr16:39907009-39907166
Coord C2 exon
chr16:39887238-39887296
Length
158 bp
Sequences
Splice sites
3' ss Seq
TATGTCTCTCTGTTTTGCAGCAG
3' ss Score
9.96
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
CCATTACACAGACATCACTGGGAAAGCGCACACACGGATAAATAATAGCTCTCATGCCACAGTCTAACTGTCACAGTGATGTTTCTATATCTGACTGCCGTGTCTGTCAGAAAAAAAATAGATTGAACGCTCGGCGTGTAAGTTATGCGGTTCAAAAGCTTTAACTTACTGGATCAGTCGGGCTGGACGCCATAATTCAGATGACGCGATTTCATATAACCTCTACAGTGAGGGATGAATGTACATCAGTCAGTCTA
Seq A exon
CAGTCATATGCCCCGCCCCCTCCGCCCATGGCTCCGCCCAGCCCCAGCACCAATAGCAGCAGCCACAGTGCAGCGGAGCAGCTCAGTAAAACCAACTTGTACATCCGGGGCCTTCCGCCTGGCACCACCGACCAGGACCTCATCAAACTCTGCCAACC
Seq C2 exon
GTATGGAAAAATAGTGTCAACAAAGGCAATCCTGGACAAAAACACCAACCAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044574-'1-8,'1-6,5-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.655 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF062597=Abhydrolase_8=PU(38.3=93.2),PF0007617=RRM_1=PU(29.4=45.5)
C2:
PF062597=Abhydrolase_8=FE(18.7=100),PF0007617=RRM_1=FE(29.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCATGCCACAGTCTAACT
R:
GGTGTTTTTGTCCAGGATTGCC
Band lengths:
256-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]