BtaEX0029984 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044062 | RBMS3
Description
RNA binding motif, single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr22:3899285-4142728:+
Coord C1 exon
chr22:3899285-3899359
Coord A exon
chr22:4065153-4065325
Coord C2 exon
chr22:4142670-4142728
Length
173 bp
Sequences
Splice sites
3' ss Seq
ACAGCCTTTTCTGTTTCCAGCAG
3' ss Score
7.64
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
ATGGGCAAACGCCTGGATCAGCCACAAATGTACCCCCAGTACACTTACTACTACCCTCATTACCTCCAAACCAAG
Seq A exon
CAGTCCTATGCACCAGCTCCCCACCCCATGGCTCCTCCCAGCCCCAGCACAAACAGCAGCAGCAACCACAGCAGCAGCAACAGCAGCGGGGAACAGTTGAGTAAAACCAACCTGTACATTCGAGGCCTCCCACCAGGCACCACTGACCAGGACCTAATCAAGCTGTGCCAACC
Seq C2 exon
GTATGGAAAAATCGTATCCACAAAGGCAATCCTTGACAAAAACACAAATCAATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044062_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.724 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=PU(30.3=34.5)
C2:
PF0007617=RRM_1=FE(30.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAACGCCTGGATCAGC
R:
TTTGCATTGATTTGTGTTTTTGTCA
Band lengths:
130-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development