RnoEX0074770 @ rn6
Exon Skipping
Gene
ENSRNOG00000025881 | Rbms3
Description
RNA binding motif, single stranded interacting protein 3 [Source:RGD Symbol;Acc:1588240]
Coordinates
chr8:125328596-125544427:-
Coord C1 exon
chr8:125544353-125544427
Coord A exon
chr8:125383756-125383913
Coord C2 exon
chr8:125328596-125328654
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCCTTCTGTTTGCAGCAG
3' ss Score
10.33
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
ATGGGCAAACGCCTGGATCAGCCACAAATGTACCCCCAGTACACGTACTACTATCCTCAGTACCTCCAAACCAAG
Seq A exon
CAGTCCTATGCACCAGCTCCCCACCCCATGGCTCCTCCCAGCCCTAGCACAAACAGCAGCAGCAACAGCAGCGGGGAACAGTTGAGTAAGACAAACCTATACATTCGAGGACTTCCACCAGGCACCACTGACCAGGACCTCATCAAGCTATGTCAACC
Seq C2 exon
GTACGGAAAAATCGTATCCACGAAGGCAATTCTTGACAAGAATACGAATCAATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025881-'4-12,'4-9,12-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.642 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=PU(30.3=37.7)
C2:
PF0007617=RRM_1=FE(30.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAACGCCTGGATCAGC
R:
TTTGCATTGATTCGTATTCTTGTCA
Band lengths:
130-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]