HsaEX0052792 @ hg38
Exon Skipping
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr3:29281346-29488499:+
Coord C1 exon
chr3:29281346-29281756
Coord A exon
chr3:29434743-29434915
Coord C2 exon
chr3:29488441-29488499
Length
173 bp
Sequences
Splice sites
3' ss Seq
ACAGCTTTTTCTGTTTCCAGCAG
3' ss Score
7.39
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
ATCACTACAGACAGCCTGGTTAGAGAACAAACTGCCTCATCCCAAGTGGACCCCGGCAGCTGGGGGAAGCCAGGCAAGATCTGGGAAGGCTGTGTGTGGGTGTTTTTTCTACAGATCTCACTCCTCGCCCTTTTTTTTTTTCCTTTGGTGTGTGTTTTTTGTTTTGTTTTGTTTTTTAAAAAAATTCTTGCTGTGTTGGAACTAGCGAGTGGTGGAGTCTCTGAAGCCTCATCAGTCACCGGGACTGTCAGGAATAGTGGTTTAAGAGGAAGCTCGGCCTGGGGCACTATACCCTGTCATCCAGTTCCCTGCCTCGGAGATAAAGATTCCAGCTACATGGGCAAACGCCTGGATCAGCCACAAATGTACCCCCAGTACACTTACTACTATCCTCATTATCTCCAAACCAAG
Seq A exon
CAGTCCTATGCACCAGCTCCCCACCCCATGGCTCCTCCCAGCCCCAGCACAAACAGCAGCAGCAACAACAGCAGCAACAACAGCAGCGGGGAACAGTTGAGTAAAACCAACCTGTACATTCGAGGCCTCCCACCAGGCACCACTGACCAGGACCTAATCAAGCTGTGCCAACC
Seq C2 exon
GTATGGAAAAATTGTATCTACAAAGGCAATTCTTGACAAAAACACAAATCAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642_MULTIEX3-4/7=3-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.247 A=0.744 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=PU(30.3=35.1)
C2:
PF0007617=RRM_1=FE(30.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGTCTCTGAAGCCTCA
R:
TGCACTGATTTGTGTTTTTGTCA
Band lengths:
257-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development