MmuEX0039205 @ mm9
Exon Skipping
Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:116965855-117161581:-
Coord C1 exon
chr9:117160845-117161581
Coord A exon
chr9:117019079-117019236
Coord C2 exon
chr9:116965855-116965913
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTTCTGTTTGCAGCAG
3' ss Score
10
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
ATTTCTTTTTTTCTCCTCCTTCGCCTTTACAAGCGCCTGCGATTGACACCACTAGAGACAGGCTGGTCACAGAGCAAACTGCTTCATCCGGACTGGACCGGGCAGCTGGGAGGAACCAGGCAGGCAAGAACTGGGGAAGCAGTCTGGGGGTTTCCGCTACAGATCTCAACCCCCATCTGTTTTTGTTTTTGTTTTCTTTTTCTTTTTCTCTTTTCTTTTTGGTTCTTTTGTTTTGCTTTGCTTTGGTTTTTTGGGTTGTTTTAAATTCCTCACGGTGTTGGAACTAGTGAGGCTGGAGTCTGAGAAGCCTCAGCAGTCACGCAGACTGCCAGGGACAGTGGATTAAGAGAAAGAAGCTCGCTTGCCTGGGGCATCATACACCCTGTTATTCAGTTTCCTGCCTCGGAGATAAAGATCCCAGCTACATGGGCAAACGCCTGGATCAGCCACAAATGTACCCCCAGTACACGTACTACTGTCCTCAGTACCTCCAAACCAAG
Seq A exon
CAGTCCTATGCACCAGCTCCCCACCCCATGGCTCCTCCCAGCCCCAGCACAAACAGCAGCAGCAACAGCAGCGGGGAACAGTTGAGTAAGACAAACCTATACATCCGAGGACTTCCACCAGGCACCACTGACCAGGACCTCATCAAGCTATGTCAACC
Seq C2 exon
GTATGGAAAAATCGTATCCACAAAGGCAATTCTTGACAAGAATACGAATCAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607-'2-5,'2-3,4-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.685 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=PU(30.3=37.7)
C2:
PF0007617=RRM_1=FE(30.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGTCTGAGAAGCCTCA
R:
TGTCAAGAATTGCCTTTGTGGA
Band lengths:
247-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: