HsaEX0052792 @ hg19
Exon Skipping
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif, single stranded interacting protein 3 [Source:HGNC Symbol;Acc:13427]
Coordinates
chr3:29322837-29529990:+
Coord C1 exon
chr3:29322837-29323247
Coord A exon
chr3:29476234-29476406
Coord C2 exon
chr3:29529932-29529990
Length
173 bp
Sequences
Splice sites
3' ss Seq
ACAGCTTTTTCTGTTTCCAGCAG
3' ss Score
7.39
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
Exon sequences
Seq C1 exon
ATCACTACAGACAGCCTGGTTAGAGAACAAACTGCCTCATCCCAAGTGGACCCCGGCAGCTGGGGGAAGCCAGGCAAGATCTGGGAAGGCTGTGTGTGGGTGTTTTTTCTACAGATCTCACTCCTCGCCCTTTTTTTTTTTCCTTTGGTGTGTGTTTTTTGTTTTGTTTTGTTTTTTAAAAAAATTCTTGCTGTGTTGGAACTAGCGAGTGGTGGAGTCTCTGAAGCCTCATCAGTCACCGGGACTGTCAGGAATAGTGGTTTAAGAGGAAGCTCGGCCTGGGGCACTATACCCTGTCATCCAGTTCCCTGCCTCGGAGATAAAGATTCCAGCTACATGGGCAAACGCCTGGATCAGCCACAAATGTACCCCCAGTACACTTACTACTATCCTCATTATCTCCAAACCAAG
Seq A exon
CAGTCCTATGCACCAGCTCCCCACCCCATGGCTCCTCCCAGCCCCAGCACAAACAGCAGCAGCAACAACAGCAGCAACAACAGCAGCGGGGAACAGTTGAGTAAAACCAACCTGTACATTCGAGGCCTCCCACCAGGCACCACTGACCAGGACCTAATCAAGCTGTGCCAACC
Seq C2 exon
GTATGGAAAAATTGTATCTACAAAGGCAATTCTTGACAAAAACACAAATCAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.725 C2=0.000
Domain overlap (PFAM):
C1:
PF072236=DUF1421=PU(25.6=84.0)
A:
PF0007617=RRM_1=PU(30.3=35.1)
C2:
PF072236=DUF1421=PD(2.4=9.5),PF0007617=RRM_1=FE(44.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGTCTCTGAAGCCTCA
R:
TGCACTGATTTGTGTTTTTGTCA
Band lengths:
257-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)