BtaALTA0024748-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000044062 | RBMS3
Description
RNA binding motif, single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr22:3899285-4065325:+
Coord C1 exon
chr22:3899285-3899359
Coord A exon
chr22:4065153-4065155
Coord C2 exon
chr22:4065156-4065325
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
ACAGCCTTTTCTGTTTCCAGCAG
3' ss Score
7.64
Exon sequences
Seq C1 exon
ATGGGCAAACGCCTGGATCAGCCACAAATGTACCCCCAGTACACTTACTACTACCCTCATTACCTCCAAACCAAG
Seq A exon
CAG
Seq C2 exon
TCCTATGCACCAGCTCCCCACCCCATGGCTCCTCCCAGCCCCAGCACAAACAGCAGCAGCAACCACAGCAGCAGCAACAGCAGCGGGGAACAGTTGAGTAAAACCAACCTGTACATTCGAGGCCTCCCACCAGGCACCACTGACCAGGACCTAATCAAGCTGTGCCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044062-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.724
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0007617=RRM_1=PU(30.3=34.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCACAAATGTACCCCCAG
R:
GTTTGTGCTGGGGCTGGG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development