HsaALTA1064094-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr3:29280982-29434915:+
Coord C1 exon
chr3:29280982-29281756
Coord A exon
chr3:29434743-29434745
Coord C2 exon
chr3:29434746-29434915
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
ACAGCTTTTTCTGTTTCCAGCAG
3' ss Score
7.39
Exon sequences
Seq C1 exon
CAAGAGACAGGAAGCTGATCTGCAAGGATTCGGAGTTGTGCTAAAAGGACTTTGATTTTTTTCCCCCTTTACGAACGCTGGCAATTGACATCACTACAGACAGCCTGGTTAGAGAACAAACTGCCTCATCCCAAGTGGACCCCGGCAGCTGGGGGAAGCCAGGCAAGATCTGGGAAGGCTGTGTGTGGGTGTTTTTTCTACAGATCTCACTCCTCGCCCTTTTTTTTTTTCCTTTGGTGTGTGTTTTTTGTTTTGTTTTGTTTTTTAAAAAAATTCTTGCTGTGTTGGAACTAGCGAGTGGTGGAGTCTCTGAAGCCTCATCAGTCACCGGGACTGTCAGGAATAGTGGTTTAAGAGGAAGCTCGGCCTGGGGCACTATACCCTGTCATCCAGTTCCCTGCCTCGGAGATAAAGATTCCAGCTACATGGGCAAACGCCTGGATCAGCCACAAATGTACCCCCAGTACACTTACTACTATCCTCATTATCTCCAAACCAAG
Seq A exon
CAG
Seq C2 exon
TCCTATGCACCAGCTCCCCACCCCATGGCTCCTCCCAGCCCCAGCACAAACAGCAGCAGCAACAACAGCAGCAACAACAGCAGCGGGGAACAGTTGAGTAAAACCAACCTGTACATTCGAGGCCTCCCACCAGGCACCACTGACCAGGACCTAATCAAGCTGTGCCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642-29-42,29-41-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=NA C2=0.741
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0007617=RRM_1=PU(30.3=35.1)
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGCTACATGGGCAAACG
R:
GGGGAGCTGGTGCATAGGA
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains