HsaEX1030897 @ hg38
Exon Skipping
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr3:29182956-29434915:+
Coord C1 exon
chr3:29182956-29183129
Coord A exon
chr3:29280955-29281113
Coord C2 exon
chr3:29434743-29434915
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTCTTGGAGGAA
3' ss Score
2.35
5' ss Seq
AAGGTTTTT
5' ss Score
3.43
Exon sequences
Seq C1 exon
TCTAGCTCCACAGTGAGAGCCTATCAAACTAGTAAGTCACGAGTGACCATGAGCCCTGGCTTCAGCTCCCAGTGGAACAGCAGCCAACCAGCCTGGAATACATACTCCTTTCCAAGAGCCAGCCTGCACTACCAGTCCCATGCCAGCTATACCTACTGTACTGGACACCCTGCT
Seq A exon
GAAATACTGCAGCCTTCTGGACTGCGTACGCTGCTCCCTGGAGAGGCTCTCTCGGTTCCACCCACCGGCTGGAAGGAGGGGAAGTGAATGAAAGGACAGGACAAGCCCCGAACACCATGTCACTCTGGGAGGGAGACAGCAGCAACTAAGCTGTACAAG
Seq C2 exon
CAGTCCTATGCACCAGCTCCCCACCCCATGGCTCCTCCCAGCCCCAGCACAAACAGCAGCAGCAACAACAGCAGCAACAACAGCAGCGGGGAACAGTTGAGTAAAACCAACCTGTACATTCGAGGCCTCCCACCAGGCACCACTGACCAGGACCTAATCAAGCTGTGCCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642_MULTIEX3-1/7=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.411 A=0.828 C2=0.744
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0007617=RRM_1=PU(30.3=34.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCTCCACAGTGAGAGCCT
R:
TGTTGTTGCTGCTGTTGTTGC
Band lengths:
255-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains