HsaEX1030898 @ hg38
Exon Skipping
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr3:29182956-29434915:+
Coord C1 exon
chr3:29182956-29183129
Coord A exon
chr3:29281240-29281418
Coord C2 exon
chr3:29434743-29434915
Length
179 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTCTTTTTCTTTAAGGTG
3' ss Score
11.5
5' ss Seq
CAGGCAAGA
5' ss Score
3.01
Exon sequences
Seq C1 exon
TCTAGCTCCACAGTGAGAGCCTATCAAACTAGTAAGTCACGAGTGACCATGAGCCCTGGCTTCAGCTCCCAGTGGAACAGCAGCCAACCAGCCTGGAATACATACTCCTTTCCAAGAGCCAGCCTGCACTACCAGTCCCATGCCAGCTATACCTACTGTACTGGACACCCTGCT
Seq A exon
GTGGGGAAAGAGACAACCAAGAGACAGGAAGCTGATCTGCAAGGATTCGGAGTTGTGCTAAAAGGACTTTGATTTTTTTCCCCCTTTACGAACGCTGGCAATTGACATCACTACAGACAGCCTGGTTAGAGAACAAACTGCCTCATCCCAAGTGGACCCCGGCAGCTGGGGGAAGCCAG
Seq C2 exon
CAGTCCTATGCACCAGCTCCCCACCCCATGGCTCCTCCCAGCCCCAGCACAAACAGCAGCAGCAACAACAGCAGCAACAACAGCAGCGGGGAACAGTTGAGTAAAACCAACCTGTACATTCGAGGCCTCCCACCAGGCACCACTGACCAGGACCTAATCAAGCTGTGCCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642_MULTIEX3-2/7=C1-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.411 A=0.583 C2=0.744
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0007617=RRM_1=PU(30.3=34.5)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGCTCCACAGTGAGAGCCT
R:
TGTTGTTGCTGCTGTTGTTGC
Band lengths:
255-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains