DreALTA0022559-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000044574 | rbms3
Description
RNA binding motif, single stranded interacting protein [Source:ZFIN;Acc:ZDB-GENE-060929-244]
Coordinates
chr16:39907009-39950633:-
Coord C1 exon
chr16:39950551-39950633
Coord A exon
chr16:39907164-39907166
Coord C2 exon
chr16:39907009-39907163
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TATGTCTCTCTGTTTTGCAGCAG
3' ss Score
9.96
Exon sequences
Seq C1 exon
CCAGCTACATGGGCAAACGCTTGGAACAGCAACCAATGTACCCCCAGTACACTTACTATTACCCTCACTACCTTCAGACTAAG
Seq A exon
CAG
Seq C2 exon
TCATATGCCCCGCCCCCTCCGCCCATGGCTCCGCCCAGCCCCAGCACCAATAGCAGCAGCCACAGTGCAGCGGAGCAGCTCAGTAAAACCAACTTGTACATCCGGGGCCTTCCGCCTGGCACCACCGACCAGGACCTCATCAAACTCTGCCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044574-0-7,0-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.655
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF062597=Abhydrolase_8=PU(38.3=93.2),PF0007617=RRM_1=PU(29.4=45.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACCAATGTACCCCCAGTA
R:
CTATTGGTGCTGGGGCTGG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]