HsaALTA0007079-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif, single stranded interacting protein 3 [Source:HGNC Symbol;Acc:13427]
Coordinates
chr3:29322473-29476406:+
Coord C1 exon
chr3:29322473-29323247
Coord A exon
chr3:29476234-29476236
Coord C2 exon
chr3:29476237-29476406
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
ACAGCTTTTTCTGTTTCCAGCAG
3' ss Score
7.39
Exon sequences
Seq C1 exon
CAAGAGACAGGAAGCTGATCTGCAAGGATTCGGAGTTGTGCTAAAAGGACTTTGATTTTTTTCCCCCTTTACGAACGCTGGCAATTGACATCACTACAGACAGCCTGGTTAGAGAACAAACTGCCTCATCCCAAGTGGACCCCGGCAGCTGGGGGAAGCCAGGCAAGATCTGGGAAGGCTGTGTGTGGGTGTTTTTTCTACAGATCTCACTCCTCGCCCTTTTTTTTTTTCCTTTGGTGTGTGTTTTTTGTTTTGTTTTGTTTTTTAAAAAAATTCTTGCTGTGTTGGAACTAGCGAGTGGTGGAGTCTCTGAAGCCTCATCAGTCACCGGGACTGTCAGGAATAGTGGTTTAAGAGGAAGCTCGGCCTGGGGCACTATACCCTGTCATCCAGTTCCCTGCCTCGGAGATAAAGATTCCAGCTACATGGGCAAACGCCTGGATCAGCCACAAATGTACCCCCAGTACACTTACTACTATCCTCATTATCTCCAAACCAAG
Seq A exon
CAG
Seq C2 exon
TCCTATGCACCAGCTCCCCACCCCATGGCTCCTCCCAGCCCCAGCACAAACAGCAGCAGCAACAACAGCAGCAACAACAGCAGCGGGGAACAGTTGAGTAAAACCAACCTGTACATTCGAGGCCTCCCACCAGGCACCACTGACCAGGACCTAATCAAGCTGTGCCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642-2-10,2-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.729
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0007617=RRM_1=PU(30.3=35.1)
Other Inclusion Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGCTACATGGGCAAACG
R:
GGGGAGCTGGTGCATAGGA
Band lengths:
104-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)