GgaALTA0006073-2/2 @ galGal4
Alternative 3'ss
Description
NA
Coordinates
chr2:39838318-39842127:+
Coord C1 exon
chr2:39838318-39838418
Coord A exon
chr2:39841958-39841960
Coord C2 exon
chr2:39841961-39842127
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
CTCTTTTCTTTTCTTTCCAGCAG
3' ss Score
10.27
Exon sequences
Seq C1 exon
GCGTAAGGAAGTTGGATGTTGGAAGGAGAAGTGTTGTTCATTTTGAAACCAAGCAGGCTTCTGGTTCAGCGTTTCTGGGTTATTGAGTAAGAAAGACCAAG
Seq A exon
CAG
Seq C2 exon
TCCTATGCACCAGCTCCCCACCCCATGGCTCCTCCCAGCCCCAGCACAAACAGCAGCAACAACAGCAGCAACAACAGCAGTGGAGAGCAGTTGAGTAAAACCAACCTGTACATTCGAGGCCTTCCACCCGGCACCACTGACCAGGACCTTATCAAACTGTGCCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011439-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTTCAGCGTTTCTGGGTT
R:
TGTTGTTGCTGCTGTTTGTGC
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]