MmuALTA0013150-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026873 | Phf19
Description
PHD finger protein 19 [Source:MGI Symbol;Acc:MGI:1921266]
Coordinates
chr2:34767137-34769496:-
Coord C1 exon
chr2:34769461-34769496
Coord A exon
NA
Coord C2 exon
chr2:34767137-34767322
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
TTCTTCTCCGATGTCAGCAGAAG
3' ss Score
4.33
Exon sequences
Seq C1 exon
GACTCCAAGTGGGACCGGCTGACGCGCTGCCTCGCG
Seq A exon
NA
Seq C2 exon
AAGCTAATGGAGACTCAAGCTCTGGAACCAGGGACTCTGGAAGCCTTTGGTGCCACCAGTCCTAACAAGGGGGGCCTGTCTAAGACCAAAAAGAACTTCAAAGACTTGATGTCTAAGGTGACAGAGGGACAGTTCGTGCTATGCAGGTGGACAGACGGGCTATATTACCTTGGCAAGATCAAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026873-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.083
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF150571=DUF4537=PU(33.3=31.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGTGGGACCGGCT
R:
CTTGTTAGGACTGGTGGCACC
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: