Special

MmuINT0055812 @ mm9

Intron Retention

Gene
ENSMUSG00000026921 | Egfl7
Description
EGF-like domain 7 [Source:MGI Symbol;Acc:MGI:2449923]
Coordinates
chr2:26441105-26444689:+
Coord C1 exon
chr2:26441105-26441195
Coord A exon
chr2:26441196-26444564
Coord C2 exon
chr2:26444565-26444689
Length
3369 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CAGGAGACATTTTGCCTTAGGCC
3' ss Score
2.21
Exon sequences
Seq C1 exon
CCCCCGGCAGCAGCAAGACGCTGGCTGTTCCACCTGCCCACAAGAACAGCCACCACCAGTACCCAGGGGATGACTAGCGGCCGGACCACAG
Seq A exon
GTGAGTCCCCAGTAAACCTTCTGGGCAGCAGCCAGGAGTCCTGCCTTGCAGGGAGCATGCACAGGAACGTGTAAACCAAGGCACGGCTAGGGTTGGAGAAATTAACAAGGCTTAGGCACCCAAAGAGCTGGGACAATTACAGAAGCAGCAGAAGTGGAGACTGGGAGAGAGAAAAGATGACCAATCCAGAAGTGGAGGGTTGTCAGCTCATATGACGCCAGGGAAAGTGGCCAAGGGTGTCAGCAGAGAGCCCATGTCTGCCAAGGAGGCTTGCGCTCACACCTAGATCTCATCTGTACTCAGCCCAGTGATCTCAGTCTAGTATTGTGGCTGGGTGTGTCATGATGCCCACCTTTTGCATGGCTCGAGGACCAGTCTGACTGGGGGGGTGGGGGTGGGGTGTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCATTTTGTAGACCAGGCTGGCCTCAAACTCAAAAATCCACCTGCCTCTGCCTCCCGAGTGCTAGGATTAAAGGCGTGCGCCACCATGCCCGGCTTCGTCAGGCATCTTGTTGTAGTCTTCTAATACCATTCAGGAGCAAGTCATCAGTCAGGAGGCTCGAGAGTTAGCTAAATCCTTGTGGGAGCCATTCATGGCTTCCTGACTCCTAGAACTTGTTTAATCCTACAACCCCCCATCAGTCACGTGATCCCTCTGCAGGCCTGGGATCAGTCAGGATGTACAAAGGAGGCTCGCAAGGCGGCACTTAGAGGCTGGGTTGCATCTAGATCACCTAGGTCTGACTTACTCGCTATAATACTAGGGAAACTGCCGCTGCACAGACTCAGTTTTGCCATCCGCGAAATGGGGACGAGCACATCGGGGAGCCCGTGGGGCTGGGGTAGGGCTCCGACGCAGCTATCAGGTGGGGCGGGGCCGAGGGCGGGGCGGGGCGGGGCTCGGGTCCCCCACAGCGCGGCGGCAGCGGCGGTGGCGGCGCGTGCGCGCCCCGGACCGCGCGGTGAGTGCGGAGATAGCCCGGGCACCAGGGGCGAGGGTATGGAGGCAGCCCGGGCGGGGCAGGGGTGACCCGGACTGTCGGGTGCCGAGATCGGGGGCGGCCACTCAGGCAACTCCGGGCGATCGCAGGGACCGGAGAGGTGAGCGCGCGAGAGCCATGGCTGAGCCGCGCTTGGACCCCACGCCCCAGCCTAGGTCCTGCAGCCGCCGGGAAAATGAGCCCAGCGGTCCTGAGAAATGGCGACCCCTGCCGGCGGCCGGAGCGCCTCTCCCCTTACCCATCTTGGCTATACGACCCCCACCTGGTCACAGCACCCCATAGCGTAGCTCAGTCCGGTCGGTCGTCCTGGGTCAGGGGTGGGGGTTGCCACACTCTCCCCTACCGCCATGGAGCCTGGGAGGGAGCAGGGTCCGGGCCATGGAGAGGACGCCCCCACCGAATCTGATCACCGAACCTGTCTGGTCTCCACACCAATCTGTGGGCGCTGATGTCTAGACACTACTGTAGCAAAGGGACCCAGGGCCCTCTCACTATGGTGTCCAGATCCCCCCTCTGCCGCCACAGCACCGCACACTCCCTCCCGGTAGGGGGCTGTTGAGTCGTAGGTGGGAAGGGAGGATGGCTGGCTGCTAGGGCCCATGGTGATACTTAATGGTTCAAGATTACTTGTAAACCTGCAGGCCACATCACAGCCTAATGCGTGGCTCACCCAGTAGCTGAGCACCAAAGGAAATGAACTTCCAGCCCAGGGCTGCTTTGGCCTCTTCTGCCCTTGGGCAAAACATGACTTTTCAAAAATTGTTTCTCTTGCTTTAAAACACAGTCCCCTTTCTAGACAGCTTATCTCTGGGAAGATTTGTGGGGGCAACGATATCTGGAGGGAAACCCTCCAGGCGCCAGGCACACAAGGATGGTAGACTTCTGACGCCCTCCCGCCCATGCCACATGCTGACTTATCTTTCTGGGTACTATTCCTCAGGATCACTTGGTTTTTGCTTGGCAGGGTAATTCTTACCCGCTGAAGGTGCCCTCCCCCCTCGGGGTTAACTCAGCTCAGACAGATTGCCACATATACCCCTGCCCAGGTATTTCCCTATGGTCTTCTTGCCCCCACATTAAGTCTCAATTACTCATCTCAAAGCCCCCTGCCTTCCTGCTTTGCTTCAACAAATATGAGGTTCAGCAAAGAGGCTCCTGGCCTAGGACTGCAGCGCAGGGCTGAATAGACAGAGTGAGAAGTGGGAAGGATCTTGCTTGAAGAGGGGCTTGGCCAGCAGCTAGAGCTCAGAAACTATTTAATATCACCACTGTTTACTCTACCAGAACTACTGATGGCTACCAGCCTTGATACCCTAGTGATGTCTTTAAGAAAACTGAGTCTCAAAGTAAGGGATTAGCTTGGGCTCATTTACACATGTTCCCTGGCCCCTTCCTTTCTGATAGGGGGTTCTGTAGGGTTGTATGGGGCGTGGGGTGGGTAGGTGGAGCTGCCTCTTTAAGAAGCCCTGAGAAGAGCCCTGAGTGGAGCCCCGTCAGCCACCTGCCCCCGACTCTGTGTAGGACAGTGAGACAGCTGTCCGTCCCCTTGCACATGTCTGACCCAGCACTTCAGCACTATCACAGACTTTAGATCTGGGGACATTCCTCAACAGCCTTCCTGCCTCTTAACACAGCCAGAAGAGGGCTGGAGATGGGCTCCAAAGGCGGTGGGGGGGGGGGGGAGGTTCCCCAGGGGTAAGCACATGAGGGCCACTGCCCTTGCAGGTGGGAGGTGTTTGTACACATGCTCTGGTCCACGAGTGGTGCCCTGTGAGCTGTAGATCCCCTTGCTGCTCAGATTATTCACACCCCACAAGGGCCTTGCCTGTGTTCACCTAGAGGTAGCTGACATTTGTGTACTGTGAAATCCATAGTGCCCTGGGGCTTGCCAAGCCTTTGCCAAACGGGCACATAGGATGGCGAGTTTCCTGCTGCACTGGATTCTGCTCCATCCACAGCATTCCTTTTCCGACAGTGAGAGATACCAGAAAGCCCTCACTCCTGCTCAGGGGGAGGACTGGCTTGGTTGCTCACTCTGCCCAGGCCCCGCCCAGAGCCTCAGGGGTTGCCTCTGACCCTAGCAGGACTCAGGTTTCTCCTTCCCCAGGAGTCCTGGTCAGCAGGCCTAGCTCTCTGTGGTTGATAAGGGACCAGCTGAGCTGGTAGAGATGGGCCAGAGGCAGGAGAGAGCTGTCACTGCCTTTGAATGCTATCCCTGGGATAGGGGTGGCTTCAGAACCCAGGAAGTGGCCAAGGGCACAGACTCTGCTGGAGGCCTGAGCCGGGGGTTCCATAGGAGACTGACAGGAGACATTTTGCCTTAG
Seq C2 exon
GCCACAAAAAGAAGAAGGCTACCCCACTTACAGATGCAGACCATGTGGGGCTCCGGAGAACTGCTTGTAGCATGGTTTCTAGTGTTGGCAGCAGATGGTACTACTGAGCATGTCTACAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026921-Egfl7:NM_198724:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF0249512=7kD_coat=PU(62.5=80.6)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000078987, ENSMUSP00000097863, ENSMUSP00000099970, ENSMUSP00000099971, ENSMUSP00000115482, ENSMUSP00000118924, ENSMUSP00000121896, ENSMUSP00000123465, ENSMUSP00000128741, ENSMUSP00000134034, ENSMUSP00000134503
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr9:136664786-136668240 
ALTERNATIVE
HsaINT0054575
(EGFL7)
Human
(hg19)
chr9:139559238-139562692 
ALTERNATIVE
HsaINT0054575
(EGFL7)
Rat
(rn6)
chr3:4036735-4040086 
ALTERNATIVE
RnoINT0053389
(Egfl7)
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
chr10:19524099-19527302 
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"