RnoINT0053389 @ rn6
Intron Retention
Gene
ENSRNOG00000019388 | Egfl7
Description
EGF-like-domain, multiple 7 [Source:RGD Symbol;Acc:708507]
Coordinates
chr3:4036572-4040211:+
Coord C1 exon
chr3:4036572-4036734
Coord A exon
chr3:4036735-4040086
Coord C2 exon
chr3:4040087-4040211
Length
3352 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GATCCAACCTTTTGCCTTAGGCC
3' ss Score
7.41
Exon sequences
Seq C1 exon
CCTCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCAGCAGCAGCAAGGCGCTGGCCGTTCCGCTCACCCACAAGAACAGCTGCCACCAGTACCCTGGGGATGACTAGAGGCCGGACCACAG
Seq A exon
GTGAGTCCTCAGTAAACCTCCTGCGTAGCAGCCTGGAGTCCTGCCTTGCAGGGAGCACGCATGTGTTAACCAAGATGCGGCTAGGGTTGGAGATGTTGACAGGCTTAGGCACCCAAAGAGCTGGGAAAATTACAGAAGCAGCAGAGTTGCAGAACTAATTCAGAAATGGAGACTGGGAGAGAGGAAAAGATGACCAATCTAGAAGTCTGGGAGTGCAGGGCTGTCAGCTCATAGAAGCACCAGGGGAGGGGTGGTCCTGACTGTCTCAAACAACGCAGTGATACCAGTGAGAGTGGCCAAGGGGTGTCAGGACAGAGCCCTGGCAGGTCTCCCCAGTAAAAGCTATGGCTGCCAAGAAAGATTGTGGTCACACCTCGATCTCATCTGTACTCTGCCCAGCGATCCCGGTCTAGTTTCGTGGCGATGCCAACCTTTTGCATGGCTGCAGGACCAGTTTGACGTCATCTTGTCCGGCATCTAGTTGTAGTCTTTTAATACCATTCGGGAGCAAGTCATCAGTCAGGAAGCTCGAGAGTTAGCCAACTTCTTGTGGGGGCCATTCCTGGCTTCCTGACTCATAACATGTTTAGTCCTACGTCCCCAGTAGCCATGTGATCACTCTGCAGGGCTGGGGACAGTCAGGATGCACGAAGGGGGCTCACACGGCAGCACTCAGAGGTTGGATTGTATCCAGACCACCCGGGTCTGGCTTACTTGCTATAACATTCGGGAACTGCTGCTGCAGAGACTCAGTTTTCCCATCCACGAAATGGGGATAGACTGATCGGGGAGCCCGTGGGGCGGGGGTAGGGCTCCAGCGCAGCCACCAGGTGGGGCGGGGCCGAGGGTGGGGCGGGGCGGTACTCCGGTCCCTCACAGCGTGGCGGCGGCGGCGGTAGCGGCGCGTGCGCGCCCCGGACCGCGCGGTGAGTGCGGAGGTAGCTGGGGCGCCGGGGGGCAAGGGTATGGAGGCAGTCAGGGCGGGGCCGGGGTGACCCGAACTGTCGGGTGCCGAGCTCGGGGGCGGCCACTCAGGCGACTCCGAACGATCGCAGGGGCCCGAGAGGTGAACGCGCGGGGGCCGCGGCTGGGCCGCGCATGGACCCCACGCCCCAACCCAGGTCCTGCAGCGGCCGGTCAAATGAGCCCAGCGGCCTTGAGAAATGGCGACCCCTGCCGGCCGCCCGTAAGGATCTCCCCTTACCCATCCTGGCTATCCAACCTCCACTTGGTCACAGCGCCCCACAGCATAGCTCAGTCCAGTCGTCCTGGGTCGGGGATGGGGGTTGCCACACACTACCCCTGCCGCTATGGAGCCAGGGAGGGACACCCAGGCCATGGAGAGGGCGCCCCCACCGAATCTGGTCGCCTGTCTGGTCTCTCCACACCAATCTCTGGGCGCTGATGTCCAGACACTTCTGTACCAAAGGGACCCAGGTCACTCCTCTGCCGACCCAGCCCCCTACTCCAGCCCCCTACTCCAGCCCCCACCCCCCACCCGGCACAGGGCTGTTGAGTCGTAGGTGGGGAGGAGAGATGGCTGTTAGGGCCCATGGTGATACTTGAGGATTCAAGATTACTTGTCAACCTGCAGGCCACACCACAGCCTATGCCTGATGCCTGGCAGAGGGCACCCAGTGGCTGAACACTAAAGGAAACAAACTTCCAATCCAGTGCTGCTCTGGCCTCTTCTGTTCTTTGGCAAAACGTGACTTTTTAAAAATCGCTTCTATCGCTTGAAAACACAGTCCCCTTTCTAGACAGCGTATCTCTACCAAGGTGCTGTGGACTAAGATTTGTCGGAGAATGACATCTGGAGAGGAACCCCGCAGGCCCCAGGGGCTAGGCACACAAGGATGGTAGACTTCTGACACCCTCTTGCCCATGCCACATGCTGGCTATTCTGAGGACCGCTTGGTTTTTGCTCGGCAGGATAATTCTCACCCGCTGAAGGTGCCCACCCCCTCACCCCCCCTTCAGGGTTAACTTTTCCGATCCAGGTCAGACAGATTGCAACATATACCCCTGCCCAGGTATTTCCCTATGGTCTTCTTTTCCCCACATTAAGTCTCACTCATCTCAGAGCCCCTTGCCCTCCTGCTTTGCTTCAACAAATAGGAGGTAGAGGCTCCTGGCCATCTTCCTATCTGGGGCTGCAGAGCAGGGCTGAGTAGACAGAGTAGCTCTGAGAAGTGGGTAGGATCTTGCTCTTCCCTTGAAGAAGGGCTTGGCCAGCAGCTAGAGTAAATGTCACCACTGTTTACTACCAGAACTACTGATGGCAGCAGGGGGGCTTTGATGTCCTAGTGATGTCTAGTGTGTCAGTTAAGAAAACTGAGTCTCGTGGTAAGGGATTGGCTTAGGCTCATAGGCACGTTTCCTGGCCCCCTCCTTTCAAGTAGGGAGTCTGTAGGGTTGTGCTGGTGGAGCCGGTGAGGGGAGCTGCCCCTTTAGGAAGCACTGAGAAGAGCCTTGAGTGGAGTCCCGTCAGCCCCCCACCCCCACCCCCGCAGGAGAGAGACAGCTGCCCCTCCCCTTTGCTCAGGTCTGACCCAGCCACTTCAGCAAGTTCACAGACCTTATATCAGGGCTGGGGTTGGTTGAATTCCTCACTGGTCTTCCTGCCTCTCGACACATACATAGCCAGAGGAGGGCTGGAGATGGGCTCCAAAGGCATGTTGTGGGGAGGGTCCGTTATGTCCCAGGGGCAAGCACATTAGGGCCATTGCCCTTGCAGCTTTGGGGGGTGTTTGCTCACATGCCCCTGTGAGCTGTAGATCCCCCTGCAGGTCAGAATATTCACACCCCACAATGGCTGTGCCTGTGTACACCTACAGGTAGCTGACATGTGTATATTGTGAAGTCTGTAGTGCTCTGGGGGCTTTGCATCTGGCAAAGAACCCCAAGCCCCAAAGAGCCACATAGGGTGGTAAGTTTCCTGCTGTGCTGGCTTCAGCTCCATGCACAGCATTCCATTTTAGACTGTGGAAGAAAGATACCAGAAAGCCCTCACTCCTGCTCAGCATACAGTGAGGGAGGACTGGCTGCTTGGTGGCTCACTCCAGCCCCACTCAGAACCTTAAGGTTTGCCCCTGACCCTAGCACGATTCAGGTTCTTCCTGCCCCAGGAGTCCTGGTTGGTCAGCAGGCCTAGCTCTCTGTGGTTGATAAGGTATCAGCTTGGCTGATAGAGATGGGTCAGAGACAGGAGAGAGCTGGCACTGCCGTTGGATGCTGTCCCTGGAATAGGGATGGCCTCGGAACCCAGGAAGTGGCCAAGGTACAGACTCTGCTGGAGGCCTGCGTCAGGAGGTTCCATAGGAGATTGACAGGATCCAACCTTTTGCCTTAG
Seq C2 exon
GCCACAAAAAGAAGAAGGCTACCCCACTTACAGATGCAGACCATGTGGGGGTCCGGAGAGCTGCTTGTAGCGTGGTTTCTAGTACTGGCAGCAGGTGGTACTACTGAGCATGTCTACAGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019388:ENSRNOT00000026318:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF075468=EMI=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]